Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8661g00002 ATGGGGATTCAGACAATGGGATCTCAAGGTATTGGGCAACAGTCTCATTTACAGTCTTCATCTTTGTCTAGGCAAGGTTCATGGTATAATCTTACTCTTGATGAGGTTAATAGTCAATTAGGAGACTTAGGGAAGCCATTGGGTAGCATGAACCTTGACGAGCTTCTTCAAAATGTGTGGACTGCCGAAGCAAGTAAGTCTTCGGTGATAGGTGCGGATAGTGAGAACATTTCGTCCTCTTCCTCGCTTCAGCGGCAGGCCAGCCTGACGCTGGCTCGTGCGTTGAGTGGGAAGACTGTGGATGACGTGTGGAGGGAAATTCAGCAAGGGCAGAAGAAAAGGTATGGAGGGGAAGTGAAAACTCAGGAGGGAGAAATGACTTTTGGTGAGACAACCTTGGAAGATTTCTTGGTGCAAGCAGGGCTTTTTGCTGAAGCTTCTATCAGTCCAGCTGTGGGGTTGGATACAATGGATTTCTCAGCAGCTCAAGGTTTCCAGCAGAAAACGGGCTTGTCTTCATCCCCTTCTATTGGCAGTTTATCGGACACGAGACCGGGCAGGAAAAGGGATGCTCCTGATGCATATGAGAAAACCCTGGAGAGGAGGTTGAGGAGGAAGATCAAGAATAGGGAATCTGCTGCTAGGTCACGAGCTCGTAAACAGGCTTACCATAATGAACTGGTTGGCAAGGTTTCCCGTCTAGAAGAAGAAAATGTAAAGCTAAAGAAAGAGAAGGAATTTGAAGAAAGGTTTACTCCCGATCCATTGCCGGAACCAAAATATCAACTTCAAAGACATAACTCTGCCCCTTTCTGA 816 0.4669 MGIQTMGSQGIGQQSHLQSSSLSRQGSWYNLTLDEVNSQLGDLGKPLGSMNLDELLQNVWTAEASKSSVIGADSENISSSSSLQRQASLTLARALSGKTVDDVWREIQQGQKKRYGGEVKTQEGEMTFGETTLEDFLVQAGLFAEASISPAVGLDTMDFSAAQGFQQKTGLSSSPSIGSLSDTRPGRKRDAPDAYEKTLERRLRRKIKNRESAARSRARKQAYHNELVGKVSRLEEENVKLKKEKEFEERFTPDPLPEPKYQLQRHNSAPF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8661g00002 271 Pfam bZIP transcription factor 201 245 IPR004827 GO:0003700|GO:0006355
Vium8661g00002 271 SUPERFAMILY Leucine zipper domain 201 247 IPR046347 GO:0003700|GO:0006355
Vium8661g00002 271 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 22 266 IPR043452 GO:0003700|GO:0045893
Vium8661g00002 271 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 199 251 - -
Vium8661g00002 271 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 204 219 IPR004827 GO:0003700|GO:0006355
Vium8661g00002 271 MobiDBLite consensus disorder prediction 242 271 - -
Vium8661g00002 271 CDD bZIP_plant_BZIP46 201 238 - -
Vium8661g00002 271 MobiDBLite consensus disorder prediction 166 196 - -
Vium8661g00002 271 Gene3D - 199 251 - -
Vium8661g00002 271 MobiDBLite consensus disorder prediction 166 181 - -
Vium8661g00002 271 Coils Coil 224 251 - -
Vium8661g00002 271 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 199 244 IPR004827 GO:0003700|GO:0006355
Vium8661g00002 271 SMART brlzneu 197 269 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8661g00002 Vium-Chr8661 18753 24393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8661g00002 6 271 bZIP Transcription Factor Family AT3G56850 45.033 3.38e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium8661g00002 bZIP_1 1.8e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8661g00002 K14432 - gmx:100798549 441.039