Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium865g00001 ATGAGTTTGCGCTCCCGATCTCTATGCTCCTCCTACGAACTTGAACTTGATGGGGATCGCGAGCTCGAGCCTTGCTTAGGCTTTCTCCAACGGGAGAGTTTCTCCATGGAGATAATCGAGAGTATCTCGCCAGAGGATCTTCAGCCAACGGTGGAGATCTGCATCGACGGACTGCATTCTTCGTCGGTGGCGGTGAAGCGATCGGCGGCGGCGAAGCTGAGGTTGTTTGCGAAGAACAGAGCGGACAACCGCGCTTTGATTGGCGAGTCTGGTGCGGTGCCTGCTCTGGTTCCGTTGCTCTGGTGCAGCGATCCGTGGACACAGGAGCACGTGGTCACGGCGTTGCTGAATATGTCTCTTCTGGAGGAGAACAAGGTGCTGATAACTAATGTTGGTGCGGTGAAGTCGCTGATTTACGTGCTTAAAACAGGAACAGAAACTTCGAAGGAGAACGCGGCTTGCGCGCTAATGAGTCTTGCATTGGTGGAGGAGAACAAGATCTCGATCAGTGCTTGCGGGGCGATATCGCTGCTGGTTTCGCTGCTATTGAATGGTTCCCACAAAGGGAAGAAGGACGCACTGACGACACTGTATAAGTTGTGTTCAGTGCGGCAGAACAAAGAGAGGACGGTGAGCGCGGGGGTAGTGAAGCCGCTAGTGGAGCTGGTGGTGCTAAATAGCTTGGCGGGGATTGAGGAGGGAAAAGAGGCGATCATGGAAGAAGTTGGTATTGTTGCGCTTGTGGAGGCGATCGAAGATGGGTCGGTGAAGGGGAAGGATCTGGAATGTCGTTGGAGAATCTAG 804 0.5386 MSLRSRSLCSSYELELDGDRELEPCLGFLQRESFSMEIIESISPEDLQPTVEICIDGLHSSSVAVKRSAAAKLRLFAKNRADNRALIGESGAVPALVPLLWCSDPWTQEHVVTALLNMSLLEENKVLITNVGAVKSLIYVLKTGTETSKENAACALMSLALVEENKISISACGAISLLVSLLLNGSHKGKKDALTTLYKLCSVRQNKERTVSAGVVKPLVELVVLNSLAGIEEGKEAIMEEVGIVALVEAIEDGSVKGKDLECRWRI 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium865g00001 267 Gene3D - 40 262 IPR011989 -
Vium865g00001 267 PANTHER U BOX DOMAIN-CONTAINING 33 260 - -
Vium865g00001 267 FunFam U-box domain-containing protein 4 37 189 - -
Vium865g00001 267 Pfam Armadillo/beta-catenin-like repeat 82 119 IPR000225 GO:0005515
Vium865g00001 267 SUPERFAMILY ARM repeat 44 241 IPR016024 -
Vium865g00001 267 SMART arm_5 162 202 IPR000225 GO:0005515
Vium865g00001 267 SMART arm_5 121 161 IPR000225 GO:0005515
Vium865g00001 267 SMART arm_5 80 120 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium865g00001 Vium-Chr865 3993 4796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium865g00001 46 260 U-box Gene Family AT2G23140 45.374 2.89e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium865g00001 - - vum:124823870 503.442