Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8655g00002 ATGTTGAGACCACACAGTACGTACCCCTTCACATGCAAGAAAAAGTGGCGAATGGCTTTCACTGCCATTTCCTTTGTCAAGCTTCTTCACCATCTCTCCAAGAAAGCTCTTCATATGAAGCCCCAAACCCTCTTCCGTTCCTTCTCCTACCGCGCCATTGATGTTGGTCCTCCACACGTGTCTTCCCCAAGTGACAAACTTTCCAACGTTGATCCCAAACTACTCAGTGAAATGGTAGGGGACAAGAGACTCGACTCTCTCACCCAATTTGGGGACGTCAAAGAACTCGCTGCACTTCTTGGAACTGATTTCAAGCTTGGCATAAGCGACGGCAACGATGACATTGATCGCCGAAAACGTGTTTTCGGTGTCAACGTGTTCACTAGGCCTCGATCTCGAGGTTTGCTTTCCTTTGTCCTTGAAGCTTTCAAGGATTCCACTATCATCATCCTTTTGTTTTGTGCCGTGCTTTCCCTTGGCTTTGGAATAAAGCAACATGGGTGGAAGGAGGGGTGGTACGACGGAGGAAGCATCATCTTGGCGGTTATTCTCGTTATTGTCGTGTCTTCCGTGAGTAACTTCAACCAATCTAGACAGTTCAAGAAGCTTTCTGCGAAGAGTGGCAAAATAGGAGTTGAAGTGGTACGAGGTGGTCGACGCCAGAGCGTGTCGATCTTTGAGGTGGTAGTGGGTGACGTTGTGCACTTGAAGATTGGCGATCAGGTTCCCGCGGACGGGTTGTTCTTAGAGGGACATTCGTTGAAGGTGGACGAATCCAGCATGTCGGGGGAGAGTGATCACGTGAATGTGAACGCTGACGCAAACCCTTTCTTGTTATCTGGCACAAAGGTCGTTGATGGTTTTGCACGCATGCTTGTAACTTCTGTGGGTATGAACACCGCATGGGGTGCGATGATAGGCTCGATCACGAGAGAGCTTGATGAGGAGACACCTTTGCAAGTTCGTCTTAAGAAATTGACTTCAGCTATTGGCAAGGTTGGTTTGTTTGTGGCTGCGCTTGTTTTGGTGGTGTCTATGGTGAGATACTTCACAGGAAATACTAGAGATGATCTTGGGAACCGAGAATTTGTCGGAAGAAAGACAAAGTTTGATGATGTCATGAATGCGGTTGTGGGGATTGTTGCTGCGGCTGTGACGATTGTGGTGGTGGCCATTCCAGAAGGGTTGCCATTGGCTGTTACGCTGACTTTGGCTTATTCCATGAAGAAAATGATGAGGGATAATGCCATGGTTAGGAGAATCTCTGCTTGTGAGACAATGGGGTCGGCAACAATAATCTGCACTGATAAAACTGGTACTCTTACAATGAATGAGATGAAGGTGAGTGAGGTTAGGGTGGGAAAAAAGCTAATATTAGAAGCTGAGAAATTGGCGCCGAGTTTAGTCCAATTATTGAAGGAAGGAATTGGGCTGAATACCACTGGAAGTGTTTACCAGCCCCAAGAAATTTCTCTGCCTGAAATTTCAGGTAGTCCTACTGAGAAAGCGTTGCTTTCTTGGGCGGTGATGGATCTGGGGATGGACATTGATGAAGTGAAGCAGCATTGTGAGATAATTCACGTGGAGACGTTTAACTCTGAGAAGAAGAGAAGTGGGATTCTTATGAAGGAGAAGAGAGGAAGCAACAGGGTGCATACGCACTGGAAAGGTGCTGCTGAGATGATATTGGCGATGTGTTCAAATTACTATGAGAACACGGGGGAAATCATGATCATGGGCGATGAAGAACGAGCACAAATTGGGAACATTGTGAAGAGCATGGCTACCAAAAGTTTGCGATGCATTGCCTTTGCCCAGAAGAGTTCCAACGGGAATGAAAACATTGAAAAGCTTGAAGAGTCTGAGCTAACATTGTTGGGGATACTTGGACTGAGAGACCCTTGTAGGCCAGGAGTCGAAGCAGCAGTTGAATCCTGCAAGAAAGCTGGAGTGAAGATCAAGATGATCACTGGAGATAATGTGCACACAGCGAGGGCCATAGCCTCAGAATGCGGGATTCTCGAGCCTGATGAAGAATTCGATGAAGAAGCGGTAGTGGAAGGCTGTCAGTTCAGAAATTACTCAGCTGAGGAGAGAATGGATAAGATCGATAGAATCAGAGTGATGGCGAGGTCATCTCCATTTGACAAGCTTTTGATGGTTCAATGTTTGAAGCACAAGGGTGAGGTGGTGGCAGTTACAGGTGATGGCACAAACGATGCACCTGCCCTGAAGGAAGCTGATATTGGACTTTCCATGGGAATAGAAGGCACTGAAGTGGCAAAGGAGAGCTCAGACATTGTTATCCTTGATGACAATTTCTCGTCTGTGGTCACAGTACTAAGATGGGGAAGATGTGTGTACATAAACATCCAAAGGTTCATTCAGTTTCAGCTCACAGTTAACATTGCTGCACTTGTAATAAACTTTGTGGCAGCAGTTTCTTCTGGTAAAGTGCCTCTGAATGCTGTGCAGCTCTTGTGGGTTAACCTGATCATGGATACTCTTGGAGCTTTGGCCTTGGCCACTGAGGAACCGACCAATGATCTCATGAAGATGCCACCTGTGGGGAGAGTTGAGCCACTTATAACTAAAGCTATGTGGAGGAACCTCATTTCACAGGCATTATATCAAGTGTTTGTGTTACTGATTTTGCAATTCAAAGGAAGATCAATCTTTGATGTGAGTGAGAAGGTGAAGAACACTATTATTTTCAACATTTTTGTCCTCTGCCAGGTTTTCAATGAGTTCAATGCAAGGAAGCTGGAGAAAAAGAATATCTTTGAGGGGCTTGGTAAGAACAAGTTGTTCATAGTAATTGTGGGTCTGACTATGGTTCTTCAGGTTGTGTTGGTTGAGTTTCTGAAGATGTTTGCTGACACTGAGAGATTGAGTTGGGGCCAATGGGGTGTTTGTGTTGCCATTGCAGCTTTGTCTTGGCCAATTGGCCTGCTTGTGAAGTGTATCTCTGTCGGTCCCAGCAAATAG 2988 0.4598 MLRPHSTYPFTCKKKWRMAFTAISFVKLLHHLSKKALHMKPQTLFRSFSYRAIDVGPPHVSSPSDKLSNVDPKLLSEMVGDKRLDSLTQFGDVKELAALLGTDFKLGISDGNDDIDRRKRVFGVNVFTRPRSRGLLSFVLEAFKDSTIIILLFCAVLSLGFGIKQHGWKEGWYDGGSIILAVILVIVVSSVSNFNQSRQFKKLSAKSGKIGVEVVRGGRRQSVSIFEVVVGDVVHLKIGDQVPADGLFLEGHSLKVDESSMSGESDHVNVNADANPFLLSGTKVVDGFARMLVTSVGMNTAWGAMIGSITRELDEETPLQVRLKKLTSAIGKVGLFVAALVLVVSMVRYFTGNTRDDLGNREFVGRKTKFDDVMNAVVGIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMRDNAMVRRISACETMGSATIICTDKTGTLTMNEMKVSEVRVGKKLILEAEKLAPSLVQLLKEGIGLNTTGSVYQPQEISLPEISGSPTEKALLSWAVMDLGMDIDEVKQHCEIIHVETFNSEKKRSGILMKEKRGSNRVHTHWKGAAEMILAMCSNYYENTGEIMIMGDEERAQIGNIVKSMATKSLRCIAFAQKSSNGNENIEKLEESELTLLGILGLRDPCRPGVEAAVESCKKAGVKIKMITGDNVHTARAIASECGILEPDEEFDEEAVVEGCQFRNYSAEERMDKIDRIRVMARSSPFDKLLMVQCLKHKGEVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFSSVVTVLRWGRCVYINIQRFIQFQLTVNIAALVINFVAAVSSGKVPLNAVQLLWVNLIMDTLGALALATEEPTNDLMKMPPVGRVEPLITKAMWRNLISQALYQVFVLLILQFKGRSIFDVSEKVKNTIIFNIFVLCQVFNEFNARKLEKKNIFEGLGKNKLFIVIVGLTMVLQVVLVEFLKMFADTERLSWGQWGVCVAIAALSWPIGLLVKCISVGPSK 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8655g00002 995 SUPERFAMILY HAD-like 432 839 IPR036412 -
Vium8655g00002 995 Gene3D - 141 987 - -
Vium8655g00002 995 SUPERFAMILY Calcium ATPase, transmembrane domain M 90 989 IPR023298 -
Vium8655g00002 995 SUPERFAMILY Calcium ATPase, transduction domain A 212 308 IPR008250 -
Vium8655g00002 995 FunFam Calcium-transporting ATPase 751 993 - -
Vium8655g00002 995 Pfam E1-E2 ATPase 212 413 - -
Vium8655g00002 995 SFLD Haloacid Dehalogenase 416 787 - -
Vium8655g00002 995 PRINTS P-type cation-transporting ATPase superfamily signature 649 659 - -
Vium8655g00002 995 PRINTS P-type cation-transporting ATPase superfamily signature 257 271 - -
Vium8655g00002 995 PRINTS P-type cation-transporting ATPase superfamily signature 734 753 - -
Vium8655g00002 995 PRINTS P-type cation-transporting ATPase superfamily signature 434 448 - -
Vium8655g00002 995 PRINTS P-type cation-transporting ATPase superfamily signature 627 638 - -
Vium8655g00002 995 PRINTS P-type cation-transporting ATPase superfamily signature 758 770 - -
Vium8655g00002 995 FunFam Calcium-transporting ATPase 187 310 - -
Vium8655g00002 995 FunFam Calcium-transporting ATPase 629 779 - -
Vium8655g00002 995 Gene3D - 431 779 IPR023214 -
Vium8655g00002 995 PANTHER CATION TRANSPORTING ATPASE 65 990 - -
Vium8655g00002 995 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 440 639 IPR023299 GO:0000166
Vium8655g00002 995 NCBIfam HAD-IC family P-type ATPase 705 816 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8655g00002 995 NCBIfam HAD-IC family P-type ATPase 378 457 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8655g00002 995 Gene3D - 444 634 IPR023299 GO:0000166
Vium8655g00002 995 SFLD p-type atpase 416 787 IPR044492 -
Vium8655g00002 995 FunFam Calcium-transporting ATPase 444 634 - -
Vium8655g00002 995 Pfam haloacid dehalogenase-like hydrolase 432 748 - -
Vium8655g00002 995 Pfam Cation transporter/ATPase, N-terminus 91 158 IPR004014 -
Vium8655g00002 995 Gene3D - 113 310 - -
Vium8655g00002 995 Pfam Cation transporting ATPase, C-terminus 819 988 IPR006068 -
Vium8655g00002 995 SMART Cation_ATPase_N_a_2 92 163 IPR004014 -
Vium8655g00002 995 ProSitePatterns E1-E2 ATPases phosphorylation site. 436 442 IPR018303 -
Vium8655g00002 995 PRINTS H+-transporting ATPase (proton pump) signature 766 791 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8655g00002 995 PRINTS H+-transporting ATPase (proton pump) signature 734 750 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8655g00002 995 PRINTS H+-transporting ATPase (proton pump) signature 587 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8655g00002 995 NCBIfam calcium-translocating P-type ATPase, PMCA-type 84 991 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8655g00002 Vium-Chr8655 9259 12371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8655g00002 14 991 Primary Pumps ATPases AT3G22910 64.496 0.0 1205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8655g00002 K01537 - gmx:100784119 1538.09