Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8649g00001 ATGAAGAAGGTTCCCAAGAACAGCTGCAAGTCCGCATCGCACAGGCTCTTTAAGGACAAGGCGAAGAACCGTGTGGATGACCTGCAGGTGATGTTCCTCGATCTGCAGTTTGCTAGGAAGGAGAGTCGCACGGTTGATGCTGCAGTGCTTGAGGAGCAAGTTCATCAAATGCTTCGCGAGTGGAAGGCCGAGCTCAATGAGCCCTCGCCTGCATCTTCGTTGCAGCAAGGTGGCAGTCTTGGGTCATTCTCCACCGATATCTGTCGGCTATTGCAGCTTTGTGATGAGGAAGATGATGCCTCTAGTCCGTTAGCTGCTCCTAAGCCTGAACCAAATGATCAGACACTACAGGCTAGGGGTAAGGTTGGCTTCCAAGAGGGCCAACAGCAACATGATTTTCCGTTGATTGATGAGTGCAAAAACTCCACCTCAAGTGTTCAAAACGCTGCAGCTAACAACCCAGATGGACATGCTTTAGAATATCATCAGTTTGATTTGCATCAGGACTATGATCATGGCTTTTACACTGGTTTTAATGGTACAGGTTATTGTGAGGAGGATGCTATTCCTCATATATCTAGCTACCTACCAAGTATCTGCCCTCCTCCTTCTGCTTTCTTAGGCCCAAAATGTGCACTTTGGGACTGTCCAAGGCCTGCACAAGGGTTGGACTGGTGTCAAGACTACTGCAGTAGCTTTCATGCTGCCTTAGCTTTGAATGAAGGGCCACCAGGCATGGCCCCAGTTCTACGACCTGGTGGAATTGGTTTGAAGGATAATTTACTTTTTGCTGCCCTTAGTGCAAAGGCACAAGGAAAAGATGTTGGCATCCCAGAATGTGAGGGAGCAGCAACTGCAAAGTCTCCATGGAATGCGCCTGAGCTCTTCGATCTGTCTGTTCTTGAGGGTGAGACTATTAGGGAGTGGCTCTTCTTTGATAAGCCACGTAGAGCATTTGAGAGTGGAAACAGAAAACAAAGGTCATTGCCAGATTATAGTGGACGTGGTTGGCATGAATCTAGAAAGCAAGTCATGAATGAGTTTGGAGGGCTGAAGAGATCCTATTATATGGATCCACAACCACTGAACCATTTTGAGTGGCACCTTTATGAATACGAGATTAGCAAGTGTGATGCATGTGCCTTGTACCGATTGGAACTGAAGCTTGTTGATGGTAAGAAGAACTCCAAGACAAAGTTAGCTAGTGATTCAGTCGCTGATCTGCAGAAGCAGATGGGAAGGCTCTCTGCTGAGTTTCCACATGACAACAAAAGGGCTGCCAAAGGCAGAACCAAAGTTAATTCAAAAGTTGGCATAGGTGGTGTCTATTCAGCTTCACACAGAGTGACTACACTGAATGGAGCGTATGAGTATGGGTTGGCTGCACCATATGACTATCTTGTTGAGAACATGGGCGACTACTATGGGACATGA 1434 0.4707 MKKVPKNSCKSASHRLFKDKAKNRVDDLQVMFLDLQFARKESRTVDAAVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSTDICRLLQLCDEEDDASSPLAAPKPEPNDQTLQARGKVGFQEGQQQHDFPLIDECKNSTSSVQNAAANNPDGHALEYHQFDLHQDYDHGFYTGFNGTGYCEEDAIPHISSYLPSICPPPSAFLGPKCALWDCPRPAQGLDWCQDYCSSFHAALALNEGPPGMAPVLRPGGIGLKDNLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEISKCDACALYRLELKLVDGKKNSKTKLASDSVADLQKQMGRLSAEFPHDNKRAAKGRTKVNSKVGIGGVYSASHRVTTLNGAYEYGLAAPYDYLVENMGDYYGT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8649g00001 477 PANTHER TRANSCRIPTION FACTOR VOZ1 1 472 IPR039277 GO:0006355|GO:0048578
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8649g00001 Vium-Chr8649 9509 23198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8649g00001 3 475 VOZ-9 Transcription Factor Family AT1G28520 71.487 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF VOZ Vium8649g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8649g00001 - - pvu:PHAVU_003G073700g 959.903