Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8644g00026 ATGGAGCTCCAGAGGCGCCAAGATCAGAGTCTTTCCCAGCGGAAGGGTCAAAAGCGGAAGCTCGACGAGGAACAGCACGACGAAAGGCAGATCTCGGCGGCGCCGTCCACCGCCGCCGAGCGAGCGGCGCTCCTCTGCGACGTCGGAGAACAGGTGAGCATCCTCGAGTCGAGTTTCACGTGGAACGAAGCGGATCGATCCGCGGCCAAACGCGCTACTCACGCGCTCGCCGATCTCGCGAAGAATGAGGAAGTGGTGAACCTGATTGTTGAAGGAGGCGCGATTCCTGCGTTGGTGAAGCATCTTCAGGCGCCGCCTCTGATTGACCGTGTCCAGAAGCCATTGCCATTCGAGCACGAGGTTGAGAAGGGGAGCGCTTTCGCATTAGGACTCCTTGCCGTCAAGCCAGAGCATCAACAGCTCATTGTTGACAGTGGTGCCTTAATACATCTTGTTGATCTTTTAAAGAGGCACAAGGATGGCTTAACATCTCGTGCTATTAATAGTCTCATTCGCAGGGCTGCAGATGCTATTACTAATCTTGCTCATGAAAACAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGATTTTGCCGATGCAAAGGTACAAAGAGCAGCTGCTGGTGCACTACGAACTCTTGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTCCCAACTTTGATTTTAATGCTACGTTCTGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTGCACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTCGCTGGAGCTTTACAGCCAGTTATTGGATTACTTAGTTCCTGCTGCTCTGAAAGCCAGAGAGAAGCAGCCTTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGTAAGGTTCACATTGTACAGAGGGGTGCTGTCCAACCATTGATAGAAATGCTTCAGTCATCTGATGTACAACTCAGGGAAATGTCAGCATTTGCGTTGGGAAGATTAGCCCAGGACACACATAACCAAGCTGGTATTGCTCACAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTTTATACGGCCTTGCAGACAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAGGCTGCAAGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAGACGTTGAAAAGATTAGAGGAGAAGATTCAGGGCCGGGTTTTGAACCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGGTTGTCAAAGGCGAGTCGCATTGGCTCTTGCACATCTTTGTTCTGCAGATGATCAGAGAAAAATTTTTATTGATCACTATGGTCTTGAGTTGCTTATAGGGCTTCTTGGATCATCCAGCTCTAAGCAGCAACTTGATGGTGCCGTGGCTTTATGCAAGTTGGCCAATAAAGCATCCACCTTGTCTCCTGTTGATGCTCCTCCTCTTTCTCCAACGCCACAGGTATATTTAGGAGAGCAGTATGTGAACAATGCTACATTGTCTGACGTTACATTTTTAGTTGAAGGCAAACAATTTTATGCACATAGAATTTGTCTACTTGCATCTTCGGATGCATTTCGTGCAATGTTTGACGGTGGTTACAGGGAGAAGGAGGCAAGAGACATAGAGATTCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTGTGTATTGTGGATCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTCGAGCAGCGGATCAATATCTTTTGGAAGGACTTAAGAGACTCTGTGAATACACAATTGCACAGGATATATCACTAGAGAATGTTTCAAGTATGTATGAGCTTTCAGAAGCCTTCAATGCAATACCACTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTGCAAGGCCAGGGCACTCTCTTCTGATTCAGCGTGTAATACCAGAGATCCGAAATTACTTTGTTAAAGCACTTACAAAGGCCAACTCCCATAACAACCGACTGTAG 2121 0.4507 MELQRRQDQSLSQRKGQKRKLDEEQHDERQISAAPSTAAERAALLCDVGEQVSILESSFTWNEADRSAAKRATHALADLAKNEEVVNLIVEGGAIPALVKHLQAPPLIDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALIHLVDLLKRHKDGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSSDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIQGRVLNHLLYLMRVSEKGCQRRVALALAHLCSADDQRKIFIDHYGLELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPVDAPPLSPTPQVYLGEQYVNNATLSDVTFLVEGKQFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAIPLRHACILFILEQFDKLSARPGHSLLIQRVIPEIRNYFVKALTKANSHNNRL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8644g00026 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Vium8644g00026 706 Gene3D - 207 415 IPR011989 -
Vium8644g00026 706 Gene3D - 416 521 IPR011989 -
Vium8644g00026 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Vium8644g00026 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Vium8644g00026 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Vium8644g00026 706 Gene3D Potassium Channel Kv1.1; Chain A 528 665 IPR011333 -
Vium8644g00026 706 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Vium8644g00026 706 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Vium8644g00026 706 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Vium8644g00026 706 SUPERFAMILY ARM repeat 434 613 IPR016024 -
Vium8644g00026 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Vium8644g00026 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Vium8644g00026 706 MobiDBLite consensus disorder prediction 1 36 - -
Vium8644g00026 706 SUPERFAMILY ARM repeat 63 410 IPR016024 -
Vium8644g00026 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 701 IPR044282 -
Vium8644g00026 706 SMART arm_5 467 507 IPR000225 GO:0005515
Vium8644g00026 706 SMART arm_5 269 309 IPR000225 GO:0005515
Vium8644g00026 706 SMART arm_5 311 351 IPR000225 GO:0005515
Vium8644g00026 706 SMART arm_5 352 392 IPR000225 GO:0005515
Vium8644g00026 706 SMART arm_5 227 267 IPR000225 GO:0005515
Vium8644g00026 706 SMART arm_5 82 134 IPR000225 GO:0005515
Vium8644g00026 706 SMART arm_5 185 225 IPR000225 GO:0005515
Vium8644g00026 706 SMART arm_5 135 183 IPR000225 GO:0005515
Vium8644g00026 706 SUPERFAMILY POZ domain 531 633 IPR011333 -
Vium8644g00026 706 Pfam BTB/POZ domain 532 634 IPR000210 GO:0005515
Vium8644g00026 706 CDD BTB_POZ_ARIA_plant 526 641 - -
Vium8644g00026 706 SMART BTB_4 539 636 IPR000210 GO:0005515
Vium8644g00026 706 MobiDBLite consensus disorder prediction 1 30 - -
Vium8644g00026 706 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Vium8644g00026 706 Gene3D - 38 206 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8644g00026 Vium-Chr8644 183707 192488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8644g00026 201 506 U-box Gene Family AT3G46510 25.407 8.19e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium8644g00026 BTB 9.4e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8644g00026 - - gmx:100784348 1274.61