Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium8644g00025 | ATGGAGCTCCAGAGGCGCCAAGATCAGAGTCTTTCCCAGCGGAAGGGTCAAAAGCGGAAGCTCGACGAGGAACAGCACGACGAAAGGCAGATCTCGGCGGCGCCGTCCACCGCCGCCGAGCGAGCGGCGCTCCTCTGCGACGTCGGAGAACAGGTGAGCATCCTCGAGTCGAGTTTCACGTGGAACGAAGCGGATCGATCCGCGGCCAAACGCGCTACTCACGCGCTCGCCGATCTCGCGAAGAATGAGGAAGTGGTGAACCTGATTGTTGAAGGAGGCGCGATTCCTGCGTTGGTGAAGCATCTTCAGGCGCCGCCTCTGATTGACCGTGTCCAGAAGCCATTGCCATTCGAGCACGAGGTTGAGAAGGGGAGCGCTTTCGCATTAGGACTCCTTGCCGTCAAGCCAGAGCATCAACAGCTCATTGTTGACAGTGGTGCCTTAATACATCTTGTTGATCTTTTAAAGAGGCACAAGGATGGCTTAACATCTCGTGCTATTAATAGTCTCATTCGCAGGGCTGCAGATGCTATTACTAATCTTGCTCATGAAAACAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGATTTTGCCGATGCAAAGGTACAAAGAGCAGCTGCTGGTGCACTACGAACTCTTGCTTTTAAAAATGATGAAAATAAAAATCAGGTAAGTTGTTGCTGGAAGTTGTGGTTTGGATATTTTACAAACAAGTCACACAACATGATGATTTTCCAGATTGTTGAATGCAATGCTCTCCCAACTTTGATTTTAATGCTACGTTCTGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTGCACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTCGCTGGAGCTTTACAGCCAGTTATTGGATTACTTAGTTCCTGCTGCTCTGAAAGCCAGAGAGAAGCAGCCTTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGTAAGGTTCACATTGTACAGAGGGGTGCTGTCCAACCATTGATAGAAATGCTTCAGTCATCTGATGTACAACTCAGGGAAATGTCAGCATTTGCGTTGGGAAGATTAGCCCAGGACACACATAACCAAGCTGGTATTGCTCACAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTTTATACGGCCTTGCAGACAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAGGCTGCAAGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAGACGTTGAAAAGATTAGAGGAGAAGATTCAGGGCCGGGTTTTGAACCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGGTTGTCAAAGGCGAGTCGCATTGGCTCTTGCACATCTTTGTTCTGCAGATGATCAGAGAAAAATTTTTATTGATCACTATGGTCTTGAGTTGCTTATAGGGCTTCTTGGATCATCCAGCTCTAAGCAGCAACTTGATGGTGCCGTGGCTTTATGCAAGTTGGCCAATAAAGCATCCACCTTGTCTCCTGTTGATGCTCCTCCTCTTTCTCCAACGCCACAGGTATATTTAGGAGAGCAGTATGTGAACAATGCTACATTGTCTGACGTTACATTTTTAGTTGAAGGCAAACAATTTTATGCACATAGAATTTGTCTACTTGCATCTTCGGATGCATTTCGTGCAATGTTTGACGGTGGTTACAGGGAGAAGGAGGCAAGAGACATAGAGATTCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTGTGTATTGTGGATCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTCGAGCAGCGGATCAATATCTTTTGGAAGGACTTAAGAGACTCTGTGAATACACAATTGCACAGGATATATCACTAGAGAATGTTTCAAGTATGTATGAGCTTTCAGAAGCCTTCAATGCAATACCACTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTGCAAGGCCAGGGCACTCTCTTCTGATTCAGCGTGTAATACCAGAGATCCGAAATTACTTTGTTAAAGCACTTACAAAGGCCAACTCCCATAACAACCGACTGTAG | 2190 | 0.4479 | MELQRRQDQSLSQRKGQKRKLDEEQHDERQISAAPSTAAERAALLCDVGEQVSILESSFTWNEADRSAAKRATHALADLAKNEEVVNLIVEGGAIPALVKHLQAPPLIDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALIHLVDLLKRHKDGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQVSCCWKLWFGYFTNKSHNMMIFQIVECNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSSDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIQGRVLNHLLYLMRVSEKGCQRRVALALAHLCSADDQRKIFIDHYGLELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPVDAPPLSPTPQVYLGEQYVNNATLSDVTFLVEGKQFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAIPLRHACILFILEQFDKLSARPGHSLLIQRVIPEIRNYFVKALTKANSHNNRL | 729 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium8644g00025 | 729 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 93 | 147 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | SUPERFAMILY | ARM repeat | 63 | 433 | IPR016024 | - | |
Vium8644g00025 | 729 | Gene3D | - | 168 | 239 | IPR011989 | - | |
Vium8644g00025 | 729 | SUPERFAMILY | POZ domain | 554 | 656 | IPR011333 | - | |
Vium8644g00025 | 729 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 196 | 231 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | ProSiteProfiles | BTB domain profile. | 562 | 629 | IPR000210 | GO:0005515 | |
Vium8644g00025 | 729 | Gene3D | - | 38 | 167 | IPR011989 | - | |
Vium8644g00025 | 729 | Pfam | Armadillo/beta-catenin-like repeat | 334 | 373 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | Pfam | Armadillo/beta-catenin-like repeat | 192 | 224 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | Pfam | Armadillo/beta-catenin-like repeat | 254 | 289 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 261 | 303 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | SMART | BTB_4 | 562 | 659 | IPR000210 | GO:0005515 | |
Vium8644g00025 | 729 | Pfam | BTB/POZ domain | 555 | 657 | IPR000210 | GO:0005515 | |
Vium8644g00025 | 729 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 146 | 196 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Vium8644g00025 | 729 | Gene3D | Potassium Channel Kv1.1; Chain A | 551 | 688 | IPR011333 | - | |
Vium8644g00025 | 729 | SMART | arm_5 | 334 | 374 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | SMART | arm_5 | 292 | 332 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | SMART | arm_5 | 490 | 530 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | SMART | arm_5 | 375 | 415 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | SMART | arm_5 | 250 | 290 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | SMART | arm_5 | 82 | 134 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | SMART | arm_5 | 185 | 225 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | SMART | arm_5 | 135 | 183 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | Gene3D | - | 248 | 434 | IPR011989 | - | |
Vium8644g00025 | 729 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 345 | 387 | IPR000225 | GO:0005515 | |
Vium8644g00025 | 729 | Gene3D | - | 438 | 543 | IPR011989 | - | |
Vium8644g00025 | 729 | PANTHER | ARM REPEAT PROTEIN INTERACTING WITH ABF2 | 256 | 724 | IPR044282 | - | |
Vium8644g00025 | 729 | CDD | BTB_POZ_ARIA_plant | 549 | 664 | - | - | |
Vium8644g00025 | 729 | SUPERFAMILY | ARM repeat | 457 | 636 | IPR016024 | - | |
Vium8644g00025 | 729 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Vium8644g00025 | 729 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 386 | 428 | IPR000225 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium8644g00025 | Vium-Chr8644 | 183705 | 192488 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium8644g00025 | 312 | 532 | U-box Gene Family | AT2G23140 | 25.764 | 5.47e-11 | 63.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | TRAF | Vium8644g00025 | BTB | 9.8e-25 | CL0033 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium8644g00025 | - | - | gmx:100784348 | 1261.51 |