Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8644g00025 ATGGAGCTCCAGAGGCGCCAAGATCAGAGTCTTTCCCAGCGGAAGGGTCAAAAGCGGAAGCTCGACGAGGAACAGCACGACGAAAGGCAGATCTCGGCGGCGCCGTCCACCGCCGCCGAGCGAGCGGCGCTCCTCTGCGACGTCGGAGAACAGGTGAGCATCCTCGAGTCGAGTTTCACGTGGAACGAAGCGGATCGATCCGCGGCCAAACGCGCTACTCACGCGCTCGCCGATCTCGCGAAGAATGAGGAAGTGGTGAACCTGATTGTTGAAGGAGGCGCGATTCCTGCGTTGGTGAAGCATCTTCAGGCGCCGCCTCTGATTGACCGTGTCCAGAAGCCATTGCCATTCGAGCACGAGGTTGAGAAGGGGAGCGCTTTCGCATTAGGACTCCTTGCCGTCAAGCCAGAGCATCAACAGCTCATTGTTGACAGTGGTGCCTTAATACATCTTGTTGATCTTTTAAAGAGGCACAAGGATGGCTTAACATCTCGTGCTATTAATAGTCTCATTCGCAGGGCTGCAGATGCTATTACTAATCTTGCTCATGAAAACAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGATTTTGCCGATGCAAAGGTACAAAGAGCAGCTGCTGGTGCACTACGAACTCTTGCTTTTAAAAATGATGAAAATAAAAATCAGGTAAGTTGTTGCTGGAAGTTGTGGTTTGGATATTTTACAAACAAGTCACACAACATGATGATTTTCCAGATTGTTGAATGCAATGCTCTCCCAACTTTGATTTTAATGCTACGTTCTGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTGCACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTCGCTGGAGCTTTACAGCCAGTTATTGGATTACTTAGTTCCTGCTGCTCTGAAAGCCAGAGAGAAGCAGCCTTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGTAAGGTTCACATTGTACAGAGGGGTGCTGTCCAACCATTGATAGAAATGCTTCAGTCATCTGATGTACAACTCAGGGAAATGTCAGCATTTGCGTTGGGAAGATTAGCCCAGGACACACATAACCAAGCTGGTATTGCTCACAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTTTATACGGCCTTGCAGACAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAGGCTGCAAGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAGACGTTGAAAAGATTAGAGGAGAAGATTCAGGGCCGGGTTTTGAACCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGGTTGTCAAAGGCGAGTCGCATTGGCTCTTGCACATCTTTGTTCTGCAGATGATCAGAGAAAAATTTTTATTGATCACTATGGTCTTGAGTTGCTTATAGGGCTTCTTGGATCATCCAGCTCTAAGCAGCAACTTGATGGTGCCGTGGCTTTATGCAAGTTGGCCAATAAAGCATCCACCTTGTCTCCTGTTGATGCTCCTCCTCTTTCTCCAACGCCACAGGTATATTTAGGAGAGCAGTATGTGAACAATGCTACATTGTCTGACGTTACATTTTTAGTTGAAGGCAAACAATTTTATGCACATAGAATTTGTCTACTTGCATCTTCGGATGCATTTCGTGCAATGTTTGACGGTGGTTACAGGGAGAAGGAGGCAAGAGACATAGAGATTCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTGTGTATTGTGGATCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTCGAGCAGCGGATCAATATCTTTTGGAAGGACTTAAGAGACTCTGTGAATACACAATTGCACAGGATATATCACTAGAGAATGTTTCAAGTATGTATGAGCTTTCAGAAGCCTTCAATGCAATACCACTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTGCAAGGCCAGGGCACTCTCTTCTGATTCAGCGTGTAATACCAGAGATCCGAAATTACTTTGTTAAAGCACTTACAAAGGCCAACTCCCATAACAACCGACTGTAG 2190 0.4479 MELQRRQDQSLSQRKGQKRKLDEEQHDERQISAAPSTAAERAALLCDVGEQVSILESSFTWNEADRSAAKRATHALADLAKNEEVVNLIVEGGAIPALVKHLQAPPLIDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALIHLVDLLKRHKDGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQVSCCWKLWFGYFTNKSHNMMIFQIVECNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSSDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIQGRVLNHLLYLMRVSEKGCQRRVALALAHLCSADDQRKIFIDHYGLELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPVDAPPLSPTPQVYLGEQYVNNATLSDVTFLVEGKQFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAIPLRHACILFILEQFDKLSARPGHSLLIQRVIPEIRNYFVKALTKANSHNNRL 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8644g00025 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Vium8644g00025 729 SUPERFAMILY ARM repeat 63 433 IPR016024 -
Vium8644g00025 729 Gene3D - 168 239 IPR011989 -
Vium8644g00025 729 SUPERFAMILY POZ domain 554 656 IPR011333 -
Vium8644g00025 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Vium8644g00025 729 ProSiteProfiles BTB domain profile. 562 629 IPR000210 GO:0005515
Vium8644g00025 729 Gene3D - 38 167 IPR011989 -
Vium8644g00025 729 Pfam Armadillo/beta-catenin-like repeat 334 373 IPR000225 GO:0005515
Vium8644g00025 729 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Vium8644g00025 729 Pfam Armadillo/beta-catenin-like repeat 254 289 IPR000225 GO:0005515
Vium8644g00025 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 261 303 IPR000225 GO:0005515
Vium8644g00025 729 SMART BTB_4 562 659 IPR000210 GO:0005515
Vium8644g00025 729 Pfam BTB/POZ domain 555 657 IPR000210 GO:0005515
Vium8644g00025 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Vium8644g00025 729 MobiDBLite consensus disorder prediction 1 36 - -
Vium8644g00025 729 Gene3D Potassium Channel Kv1.1; Chain A 551 688 IPR011333 -
Vium8644g00025 729 SMART arm_5 334 374 IPR000225 GO:0005515
Vium8644g00025 729 SMART arm_5 292 332 IPR000225 GO:0005515
Vium8644g00025 729 SMART arm_5 490 530 IPR000225 GO:0005515
Vium8644g00025 729 SMART arm_5 375 415 IPR000225 GO:0005515
Vium8644g00025 729 SMART arm_5 250 290 IPR000225 GO:0005515
Vium8644g00025 729 SMART arm_5 82 134 IPR000225 GO:0005515
Vium8644g00025 729 SMART arm_5 185 225 IPR000225 GO:0005515
Vium8644g00025 729 SMART arm_5 135 183 IPR000225 GO:0005515
Vium8644g00025 729 Gene3D - 248 434 IPR011989 -
Vium8644g00025 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 345 387 IPR000225 GO:0005515
Vium8644g00025 729 Gene3D - 438 543 IPR011989 -
Vium8644g00025 729 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 256 724 IPR044282 -
Vium8644g00025 729 CDD BTB_POZ_ARIA_plant 549 664 - -
Vium8644g00025 729 SUPERFAMILY ARM repeat 457 636 IPR016024 -
Vium8644g00025 729 MobiDBLite consensus disorder prediction 1 30 - -
Vium8644g00025 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8644g00025 Vium-Chr8644 183705 192488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8644g00025 312 532 U-box Gene Family AT2G23140 25.764 5.47e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium8644g00025 BTB 9.8e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8644g00025 - - gmx:100784348 1261.51