Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium863g00008 ATGACCATGGGTGATCATAATAGTAACTGGGGAACTTCTGAATTTAAACATCATCAACTTGGACTTGATGTTCCAAAATTCAAGTCTGCTCAACCTCCTTCTCTACCTCTCTCTCCCTCTCCCCCTTCCCCTTCTTCTTACTTGCCCTTTTCATCTGCTTTCAGCCCATCCGAGTTCTTCAACTCTTCTTTGTTTTTGCCTTCTCCAAATATTTTTGCATCTCCTACTACTGAGGCTTTGGCTGCGCAGACCTTCAACTGGAGGAACGGTTCAGGAGAAGAAGAACAACAACGTGACAAAGAGGATGAGAAAAACTACTCGGACTTCTCTTTCCAAACCCAAATTCAATCTTCCTCAGGCATGCTTCAAGTGCAGGAACCTCTTAAGAAGCAAGATATGTGGAAATTCAATGAACCTTCAAAGCAAACTGATTATTCATCTGAGAGGACAGCAACAAAATCTGAATACCCTCCGATTCAGAGCTTTTCCGCAGAAATGGCATCGCACAAATCAGAATTACAAAGCAATTCAGTTCCTGGGTCTGGTCGTTTTAATTACGCCAATGCATCTCAGTCTGTTAGAGAACAAAAGAGATCGGAAGACGGATTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAATGCACACATCCAAATTGCTCTGTGAAGAAGAAAGTTGAGAAGTCTTTGGATGGCCAAATTACTGAAATAGTGTACAAGGGCCATCATAACCACCCAAAACCACAGTCTACTAGAAGAACAAGCTCTCAATCAATTCATCAACCTTCTTCATCTTGCACAAACTCTGGGATTTCTGATCAATCAGTGGTGACCCTAGGCAATCCACAAATGGATCATTTCTCCATGAAGGAAGATTCTTCAGCTTCTGTAGGAGAGGAGGAGTTTGAACAAACATCCCAAACCAGTTATTCTGGGGGAGATGAAGATAACCTTGGACCAGAGGCAAAAAGATGGAAAGGAGATAATGAAAATGATGACTATTCCGCCTCAGGGAGTAGAACTGTGAGAGAGCCTAGAGTTGTAGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTAGTGAAAGGAAATCCAAATGCAAGGAGCTATTACAAATGCACTGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGAGAGCTGCGCATGATATCAAAGCTGTGATCACAACCTATGAAGGGAAACACAACCATGATGTGCCTGCTGCACGTGGTAGCGCAAGTTATAACATGAACAGAAATCCTGTGAACAGCAGCATATCGGCTCCTATAAGACCCTCTGCAGTGAACTGTTATTCCAACTCATCAGGTTTCAAAAATTCTCTCTACAATAATACCAAACTTCCAGCAACCAGAAATCAGGAATCTTTTGCACTGGACAAGTTCCAGAACCCTGGAAATTTTGGCCAATCGGCTCTCAACAAATCAATGAGTTCATACACGGATCATGCACCGTACTCACATGCTACATACTCAAATGCCAAGGATGAGAGAAAGGATGACTCCTTCCTTCAGTCATTTCTGTCAAAGGACTTCTGA 1620 0.4222 MTMGDHNSNWGTSEFKHHQLGLDVPKFKSAQPPSLPLSPSPPSPSSYLPFSSAFSPSEFFNSSLFLPSPNIFASPTTEALAAQTFNWRNGSGEEEQQRDKEDEKNYSDFSFQTQIQSSSGMLQVQEPLKKQDMWKFNEPSKQTDYSSERTATKSEYPPIQSFSAEMASHKSELQSNSVPGSGRFNYANASQSVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSLDGQITEIVYKGHHNHPKPQSTRRTSSQSIHQPSSSCTNSGISDQSVVTLGNPQMDHFSMKEDSSASVGEEEFEQTSQTSYSGGDEDNLGPEAKRWKGDNENDDYSASGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSASYNMNRNPVNSSISAPIRPSAVNCYSNSSGFKNSLYNNTKLPATRNQESFALDKFQNPGNFGQSALNKSMSSYTDHAPYSHATYSNAKDERKDDSFLQSFLSKDF 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium863g00008 539 FunFam WRKY transcription factor 33 355 421 - -
Vium863g00008 539 Pfam WRKY DNA -binding domain 369 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium863g00008 539 Pfam WRKY DNA -binding domain 200 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium863g00008 539 MobiDBLite consensus disorder prediction 309 324 - -
Vium863g00008 539 FunFam WRKY transcription factor 188 259 - -
Vium863g00008 539 Gene3D WRKY domain 355 421 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium863g00008 539 SUPERFAMILY WRKY DNA-binding domain 195 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium863g00008 539 MobiDBLite consensus disorder prediction 260 300 - -
Vium863g00008 539 SUPERFAMILY WRKY DNA-binding domain 360 428 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium863g00008 539 ProSiteProfiles WRKY domain profile. 194 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium863g00008 539 ProSiteProfiles WRKY domain profile. 363 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium863g00008 539 MobiDBLite consensus disorder prediction 173 204 - -
Vium863g00008 539 MobiDBLite consensus disorder prediction 249 352 - -
Vium863g00008 539 MobiDBLite consensus disorder prediction 327 349 - -
Vium863g00008 539 MobiDBLite consensus disorder prediction 173 193 - -
Vium863g00008 539 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 108 449 IPR044810 GO:0003700
Vium863g00008 539 Gene3D WRKY domain 185 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium863g00008 539 MobiDBLite consensus disorder prediction 21 48 - -
Vium863g00008 539 MobiDBLite consensus disorder prediction 32 46 - -
Vium863g00008 539 SMART WRKY_cls 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium863g00008 539 SMART WRKY_cls 368 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium863g00008 Vium-Chr863 99224 102308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium863g00008 22 461 WRKY Transcription Factor Family AT2G38470 51.991 1.72e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium863g00008 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium863g00008 K13424 - gmx:100776837 891.338