Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium863g00007 ATGACCATGGGTGATCATAATAGTAACTGGGGAACTTCTGAATTTAAACATCATCAACTTGGACTTGATGTTCCAAAATTCAAGTCTGCTCAACCTCCTTCTCTACCTCTCTCTCCCTCTCCCCCTTCCCCTTCTTCTTACTTGCCCTTTTCATCTGCTTTCAGCCCATCCGAGTTCTTCAACTCTTCTTTGTTTTTGCCTTCTCCAAATATTTTTGCATCTCCTACTACTGAGGCTTTGGCTGCGCAGACCTTCAACTGGAGGAACGGTTCAGGAGAAGAAGAACAACAACGTGACAAAGAGGATGAGAAAAACTACTCGGACTTCTCTTTCCAAACCCAAATTCAATCTTCCTCAGGCATGCTTCAAGTGGAACCTCTTAAGAAGCAAGATATGTGGAAATTCAATGAACCTTCAAAGCAAACTGATTATTCATCTGAGAGGACAGCAACAAAATCTGAATACCCTCCGATTCAGAGCTTTTCCGCAGAAATGGCATCGCACAAATCAGAATTACAAAGCAATTCAGTTCCTGGGTCTGGTCGTTTTAATTACGCCAATGCATCTCAGTCTGTTAGAGAACAAAAGAGATCGGAAGACGGATTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAATGCACACATCCAAATTGCTCTGTGAAGAAGAAAGTTGAGAAGTCTTTGGATGGCCAAATTACTGAAATAGTGTACAAGGGCCATCATAACCACCCAAAACCACAGTCTACTAGAAGAACAAGCTCTCAATCAATTCATCAACCTTCTTCATCTTGCACAAACTCTGGGATTTCTGATCAATCAGTGGTGACCCTAGGCAATCCACAAATGGATCATTTCTCCATGAAGGAAGATTCTTCAGCTTCTGTAGGAGAGGAGGAGTTTGAACAAACATCCCAAACCAGTTATTCTGGGGGAGATGAAGATAACCTTGGACCAGAGGCAAAAAGATGGAAAGGAGATAATGAAAATGATGACTATTCCGCCTCAGGGAGTAGAACTGTGAGAGAGCCTAGAGTTGTAGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTAGTGAAAGGAAATCCAAATGCAAGGAGCTATTACAAATGCACTGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGAGAGCTGCGCATGATATCAAAGCTGTGATCACAACCTATGAAGGGAAACACAACCATGATGTGCCTGCTGCACGTGGTAGCGCAAGTTATAACATGAACAGAAATCCTGTGAACAGCAGCATATCGGCTCCTATAAGACCCTCTGCAGTGAACTGTTATTCCAACTCATCAGGTTTCAAAAATTCTCTCTACAATAATACCAAACTTCCAGCAACCAGAAATCAGGAATCTTTTGCACTGGACAAGTTCCAGAACCCTGGAAATTTTGGCCAATCGGCTCTCAACAAATCAATGAGTTCATACACGGATCATGCACCGTACTCACATGCTACATACTCAAATGCCAAGGATGAGAGAAAGGATGACTCCTTCCTTCAGTCATTTCTGTCAAAGGACTTCTGA 1617 0.4218 MTMGDHNSNWGTSEFKHHQLGLDVPKFKSAQPPSLPLSPSPPSPSSYLPFSSAFSPSEFFNSSLFLPSPNIFASPTTEALAAQTFNWRNGSGEEEQQRDKEDEKNYSDFSFQTQIQSSSGMLQVEPLKKQDMWKFNEPSKQTDYSSERTATKSEYPPIQSFSAEMASHKSELQSNSVPGSGRFNYANASQSVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSLDGQITEIVYKGHHNHPKPQSTRRTSSQSIHQPSSSCTNSGISDQSVVTLGNPQMDHFSMKEDSSASVGEEEFEQTSQTSYSGGDEDNLGPEAKRWKGDNENDDYSASGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSASYNMNRNPVNSSISAPIRPSAVNCYSNSSGFKNSLYNNTKLPATRNQESFALDKFQNPGNFGQSALNKSMSSYTDHAPYSHATYSNAKDERKDDSFLQSFLSKDF 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium863g00007 538 SMART WRKY_cls 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium863g00007 538 SMART WRKY_cls 367 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium863g00007 538 Gene3D WRKY domain 354 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium863g00007 538 SUPERFAMILY WRKY DNA-binding domain 359 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium863g00007 538 MobiDBLite consensus disorder prediction 326 348 - -
Vium863g00007 538 MobiDBLite consensus disorder prediction 259 299 - -
Vium863g00007 538 MobiDBLite consensus disorder prediction 165 192 - -
Vium863g00007 538 ProSiteProfiles WRKY domain profile. 193 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium863g00007 538 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 108 448 IPR044810 GO:0003700
Vium863g00007 538 ProSiteProfiles WRKY domain profile. 362 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium863g00007 538 MobiDBLite consensus disorder prediction 165 226 - -
Vium863g00007 538 SUPERFAMILY WRKY DNA-binding domain 194 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium863g00007 538 MobiDBLite consensus disorder prediction 242 351 - -
Vium863g00007 538 MobiDBLite consensus disorder prediction 308 323 - -
Vium863g00007 538 MobiDBLite consensus disorder prediction 21 48 - -
Vium863g00007 538 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium863g00007 538 Pfam WRKY DNA -binding domain 368 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium863g00007 538 MobiDBLite consensus disorder prediction 86 106 - -
Vium863g00007 538 MobiDBLite consensus disorder prediction 32 46 - -
Vium863g00007 538 FunFam WRKY transcription factor 187 258 - -
Vium863g00007 538 Gene3D WRKY domain 184 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium863g00007 538 MobiDBLite consensus disorder prediction 92 106 - -
Vium863g00007 538 FunFam WRKY transcription factor 33 354 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium863g00007 Vium-Chr863 99224 102309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium863g00007 22 460 WRKY Transcription Factor Family AT2G38470 51.885 4.25e-115 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium863g00007 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium863g00007 K13424 - gmx:100776837 895.96