Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium863g00005 ATGACTTCCTCAAGCGGAACATGTTCGGGTTCATCCTCTCTGCTTCAGAACTCGAGTTCTGAGGAGGACTTGCAAGCGGTAATGGATCAGAGAAAGAGGAAGAGAATGACATCGAATTGCGAATCTGCACGGCGATCTCGCATGAGGAAGCAGAAGCACTTGGACGATCTGGTTACCCAAGTGGCTCAGCTGAGAAAGGAGAATCAGCAGATACTCACCACCGTCAACATCACCACGCAGCAGTTCTTGAGCGTTGAGGCTGAGAACTCGGTGCTCCGGGCTCAGGTGGGTGAGCTGAGCCATCGGTTAGAGTCTCTGAATAAGATCATCGAACTCTAG 339 0.5133 MTSSSGTCSGSSSLLQNSSSEEDLQAVMDQRKRKRMTSNCESARRSRMRKQKHLDDLVTQVAQLRKENQQILTTVNITTQQFLSVEAENSVLRAQVGELSHRLESLNKIIEL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium863g00005 112 CDD bZIP_plant_GBF1 32 82 IPR045314 GO:0003700|GO:0006355
Vium863g00005 112 Pfam bZIP transcription factor 31 75 IPR004827 GO:0003700|GO:0006355
Vium863g00005 112 MobiDBLite consensus disorder prediction 1 52 - -
Vium863g00005 112 Coils Coil 47 74 - -
Vium863g00005 112 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 29 92 IPR004827 GO:0003700|GO:0006355
Vium863g00005 112 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 34 49 IPR004827 GO:0003700|GO:0006355
Vium863g00005 112 MobiDBLite consensus disorder prediction 1 24 - -
Vium863g00005 112 FunFam BZIP transcription factor 29 81 - -
Vium863g00005 112 PANTHER BZIP TRANSCRIPTION FACTOR 44 7 110 - -
Vium863g00005 112 SMART brlzneu 27 91 IPR004827 GO:0003700|GO:0006355
Vium863g00005 112 SUPERFAMILY Leucine zipper domain 31 83 IPR046347 GO:0003700|GO:0006355
Vium863g00005 112 MobiDBLite consensus disorder prediction 25 52 - -
Vium863g00005 112 Gene3D - 29 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium863g00005 Vium-Chr863 93207 94138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium863g00005 25 112 bZIP Transcription Factor Family AT4G34590 69.318 4.00e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium863g00005 bZIP_1 3.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium863g00005 K25786 - gmx:100101862 172.94