Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8639g00008 ATGGCGTCTTCGTCGTCGCTGGCGAAGCGATGCCATTACGAAGTGCTCGATCTCCCCCAAGACTGTGCTCCCGAGGAGATTCGCTCCTCCTACCGCCGCCTTGCCCTTCAGCGCCACCCGGACAAGCTCATAAAATCGGGTATCTCCCAAGAGGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCATACGAAGTTCTCTCCGACCCCAAGGAACGCGCTTGGTACGATTCCCACCGTTCCCAAATCCTCTTCTCCGACCCTAATTCCCTCTCCAAATCGGTCGTCCCCGACCTCTTCTCCTTCTTCTCCAACACCGTCTATTCCGGCTACTCTGACACCGGAAAGGGCTTTTATAAAGTTTATTCTGATGTTTTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGGAAAATGGGGCTCGGAGTTGAGGCTGTTCGACAGGCTCCTCTAATGGGGAACTTGGATAGCCCCTACGCGCAGGTCACTGCGTTTTATGGATATTGGTTAGGGTTTTGTACTGTGATGGACTTTTTTTGGGTGGATGAGTATGATGTTATGGCAGGGCCGAACCGGAAGTCGCGGCGGCTTATGGAGGAGGAGAATAATAAGGCTAGGAAGAAGGCGAGAAGGGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAGGGTGAAGAAGAATATGGAGATGGAGAGGAAGAAGGAAGAAGAGAGGGAGACAAAGAAGAGGTTGGAGAAGGAGAGGAAGGAGAGGGCCATGGCGTATGAGGAGGCTGATTGGGCTAAGGTTGATAATGAGGAGGAGGTAGAGGAATGGGTCGAGGAGGGGGAGGAGGAGAAGAAGAAGAATGATAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAAAATCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCGGAGTTCAGGGATTCCATTGGTGATGAGCAGGATTTGGAAGAAGGAAAGGAGGGACTGGGAAGTGAGGAAGATGGGGTTGGGGTGGATGGTGATGGTGGTTATGGGGTTGGTGATTTGGAAGCGAGGATTCGGGATGATCTTAATGTTGAAGACGGGGTAATTAGAAACGGGGTTGAACCGGATGATGATGATGATTGCGGTGGTGATGAGTTTTCCGATGCTTCGCATGCGAAGGAGGGGGAAGATTCCAATGGGTTGGTTAATCTTGATGATAGTGGCAATCAAGACGGTGATAACGATGACAATGGTGTTGTTGATGAGTTTTCCGATGCTTCGCTTGCGAAGGAGGGGGAAGATTCCAATGGGTCGGTTAATCTTGATGATGGTGGCAATCAAGACGGTGATAACGATGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGCCACAAGAACAGAAAGCCACGAGCTTCAACCCACAAATCCAAGGCTTCAATAGTTCCATCTCAAATTGAAACTGAGAAGGATGAATCTGGCCCTATGGAGTACAACAACCGGAAGCCCACAAGAAAGAAACGTAGAGCTAAGAAAGAGAAGGGTAGGGAAAATTGGGAAGAATCTCAGGGGACTGCTTCCAGTTGCAATGATGAGAACATAAACGGTAATGGAAATGACAATGCTCACGGAGAGGAGTCTTCTTCCCAACATTTTACGGAAAATGGGGATAACATTATTGGGAATGAGCAGGTTAGTAGAGGTAATAAGATTTCAAACCAACCCGCTGATAAAAAGGGAGCTGGCAAGGACACAAAAATCACAGCCAAAATTTCATCCAAAGGAAGAAAAGCAAAGGTAAGAACTTCGGAATATACCTGCTCTGTTCTCCATGCCTCATAA 1881 0.4822 MASSSSLAKRCHYEVLDLPQDCAPEEIRSSYRRLALQRHPDKLIKSGISQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSLSKSVVPDLFSFFSNTVYSGYSDTGKGFYKVYSDVFDKIHANEINFARKMGLGVEAVRQAPLMGNLDSPYAQVTAFYGYWLGFCTVMDFFWVDEYDVMAGPNRKSRRLMEEENNKARKKARREYNDTVRRLGDFVKKRDKRVIDMRVKKNMEMERKKEEERETKKRLEKERKERAMAYEEADWAKVDNEEEVEEWVEEGEEEKKKNDKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSIGDEQDLEEGKEGLGSEEDGVGVDGDGGYGVGDLEARIRDDLNVEDGVIRNGVEPDDDDDCGGDEFSDASHAKEGEDSNGLVNLDDSGNQDGDNDDNGVVDEFSDASLAKEGEDSNGSVNLDDGGNQDGDNDENGVLEAMVAGHKNRKPRASTHKSKASIVPSQIETEKDESGPMEYNNRKPTRKKRRAKKEKGRENWEESQGTASSCNDENINGNGNDNAHGEESSSQHFTENGDNIIGNEQVSRGNKISNQPADKKGAGKDTKITAKISSKGRKAKVRTSEYTCSVLHAS 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8639g00008 626 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Vium8639g00008 626 MobiDBLite consensus disorder prediction 534 586 - -
Vium8639g00008 626 MobiDBLite consensus disorder prediction 312 612 - -
Vium8639g00008 626 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 5 616 IPR044648 -
Vium8639g00008 626 SUPERFAMILY beta-beta-alpha zinc fingers 289 338 IPR036236 -
Vium8639g00008 626 Coils Coil 238 267 - -
Vium8639g00008 626 Pfam DnaJ domain 12 77 IPR001623 -
Vium8639g00008 626 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Vium8639g00008 626 MobiDBLite consensus disorder prediction 367 390 - -
Vium8639g00008 626 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Vium8639g00008 626 Gene3D DnaJ domain 2 93 IPR036869 -
Vium8639g00008 626 MobiDBLite consensus disorder prediction 399 414 - -
Vium8639g00008 626 Gene3D Classic Zinc Finger 288 350 - -
Vium8639g00008 626 SMART dnaj_3 10 72 IPR001623 -
Vium8639g00008 626 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Vium8639g00008 626 Coils Coil 196 216 - -
Vium8639g00008 626 CDD DnaJ 11 69 IPR001623 -
Vium8639g00008 626 MobiDBLite consensus disorder prediction 445 459 - -
Vium8639g00008 626 MobiDBLite consensus disorder prediction 312 352 - -
Vium8639g00008 626 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Vium8639g00008 626 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Vium8639g00008 626 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Vium8639g00008 626 MobiDBLite consensus disorder prediction 590 612 - -
Vium8639g00008 626 PRINTS DnaJ domain signature 13 31 IPR001623 -
Vium8639g00008 626 PRINTS DnaJ domain signature 52 72 IPR001623 -
Vium8639g00008 626 PRINTS DnaJ domain signature 31 46 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8639g00008 Vium-Chr8639 17060 20108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8639g00008 1 544 C2H2 Transcription Factor Family AT1G74250 51.641 9.58e-166 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium8639g00008 DnaJ 4.6e-20 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8639g00008 K09506 - gmx:100788305 780.785