Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8639g00007 ATGGCGTCTTCGTCGTCGCTGGCGAAGCGATGCCATTACGAAGTGCTCGATCTCCCCCAAGACTGTGCTCCCGAGGAGATTCGCTCCTCCTACCGCCGCCTTGCCCTTCAGCGCCACCCGGACAAGCTCATAAAATCGGGTATCTCCCAAGAGGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCATACGAAGTTCTCTCCGACCCCAAGGAACGCGCTTGGTACGATTCCCACCGTTCCCAAATCCTCTTCTCCGACCCTAATTCCCTCTCCAAATCGGTCGTCCCCGACCTCTTCTCCTTCTTCTCCAACACCGTCTATTCCGGCTACTCTGACACCGGAAAGGGCTTTTATAAAGTTTATTCTGATGTTTTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGGAAAATGGGGCTCGGAGTTGAGGCTGTTCGACAGGCTCCTCTAATGGGGAACTTGGATAGCCCCTACGCGCAGGTCACTGCGTTTTATGGATATTGGTTAGGGTTTTGTACTGTGATGGACTTTTTTTGGGTGGATGAGTATGATGTTATGGCAGGGCCGAACCGGAAGTCGCGGCGGCTTATGGAGGAGGAGAATAATAAGGCTAGGAAGAAGGCGAGAAGGGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAGGGTGAAGAAGAATATGGAGATGGAGAGGAAGAAGGAAGAAGAGAGGGAGACAAAGAAGAGGTTGGAGAAGGAGAGGAAGGAGAGGGCCATGGCGTATGAGGAGGCTGATTGGGCTAAGGTTGATAATGAGGAGGAGGTAGAGGAATGGGTCGAGGAGGGGGAGGAGGAGAAGAAGAAGAATGATAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAAAATCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCGGAGTTCAGGGATTCCATTGGTGATGAGCAGGATTTGGAAGAAGGAAAGGAGGGACTGGGAAGTGAGGAAGATGGGGTTGGGGTGGATGGTGATGGTGGTTATGGGGTTGGTGATTTGGAAGCGAGGATTCGGGATGATCTTAATGTTGAAGACGGGGTAATTAGAAACGGGGTTGAACCGGATGATGATGATGATTGCGGTGGTGATGAGTTTTCCGATGCTTCGCATGCGAAGGAGGGGGAAGATTCCAATGGGTTGGTTAATCTTGATGATAGTGGCAATCAAGACGGTGATAACGATGACAATGGTGTTGTTGATGAGTTTTCCGATGCTTCGCTTGCGAAGGAGGGGGAAGATTCCAATGGGTCGGTTAATCTTGATGATGGTGGCAATCAAGACGGTGATAACGATGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGCCACAAGAACAGAAAGCCACGAGCTTCAACCCACAAATCCAAGGCTTCAATAGTTCCATCTCAAATTGAAACTGAGAAGGATGAATCTGGCCCTATGGAGTACAACAACCGGAAGCCCACAAGAAAGAAACGTAGAGCTAAGAAAGAGAAGGGTAGGGAAAATTGGGAAGAATCTCAGGGGACTGCTTCCAGTTGCAATGATGAGAACATAAACGGTAATGGAAATGACAATGCTCACGGAGAGGAGTCTTCTTCCCAACATTTTACGGAAAATGGGGATAACATTATTGGGAATGAGCAGGTTAGTAGAGGTAATAAGATTTCAAACCAACCCGCTGATAAAAAGGGAGCTGGCAAGGACACAAAAATCACAGCCAAAATTTCATCCAAAGGAAGAAAAGCAAAGGTGACATCGAAAAACATTGGTAATACTTGTGATGCGTGTGGAGAGGAGTTTGAGTCAAGAAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACAATAATAAGAGGTCGATAA 1956 0.4775 MASSSSLAKRCHYEVLDLPQDCAPEEIRSSYRRLALQRHPDKLIKSGISQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSLSKSVVPDLFSFFSNTVYSGYSDTGKGFYKVYSDVFDKIHANEINFARKMGLGVEAVRQAPLMGNLDSPYAQVTAFYGYWLGFCTVMDFFWVDEYDVMAGPNRKSRRLMEEENNKARKKARREYNDTVRRLGDFVKKRDKRVIDMRVKKNMEMERKKEEERETKKRLEKERKERAMAYEEADWAKVDNEEEVEEWVEEGEEEKKKNDKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSIGDEQDLEEGKEGLGSEEDGVGVDGDGGYGVGDLEARIRDDLNVEDGVIRNGVEPDDDDDCGGDEFSDASHAKEGEDSNGLVNLDDSGNQDGDNDDNGVVDEFSDASLAKEGEDSNGSVNLDDGGNQDGDNDENGVLEAMVAGHKNRKPRASTHKSKASIVPSQIETEKDESGPMEYNNRKPTRKKRRAKKEKGRENWEESQGTASSCNDENINGNGNDNAHGEESSSQHFTENGDNIIGNEQVSRGNKISNQPADKKGAGKDTKITAKISSKGRKAKVTSKNIGNTCDACGEEFESRNKLHKHLGDSGHATIIRGR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8639g00007 651 MobiDBLite consensus disorder prediction 534 586 - -
Vium8639g00007 651 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vium8639g00007 651 PRINTS DnaJ domain signature 52 72 IPR001623 -
Vium8639g00007 651 PRINTS DnaJ domain signature 13 31 IPR001623 -
Vium8639g00007 651 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Vium8639g00007 651 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Vium8639g00007 651 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 5 647 IPR044648 -
Vium8639g00007 651 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Vium8639g00007 651 MobiDBLite consensus disorder prediction 590 604 - -
Vium8639g00007 651 CDD DnaJ 11 69 IPR001623 -
Vium8639g00007 651 MobiDBLite consensus disorder prediction 312 352 - -
Vium8639g00007 651 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Vium8639g00007 651 SUPERFAMILY beta-beta-alpha zinc fingers 289 338 IPR036236 -
Vium8639g00007 651 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Vium8639g00007 651 MobiDBLite consensus disorder prediction 312 609 - -
Vium8639g00007 651 SMART c2h2final6 300 324 IPR013087 -
Vium8639g00007 651 SMART c2h2final6 620 644 IPR013087 -
Vium8639g00007 651 Coils Coil 238 267 - -
Vium8639g00007 651 MobiDBLite consensus disorder prediction 367 390 - -
Vium8639g00007 651 MobiDBLite consensus disorder prediction 399 414 - -
Vium8639g00007 651 Gene3D Classic Zinc Finger 288 350 - -
Vium8639g00007 651 SMART dnaj_3 10 72 IPR001623 -
Vium8639g00007 651 Coils Coil 196 216 - -
Vium8639g00007 651 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Vium8639g00007 651 ProSitePatterns Zinc finger C2H2 type domain signature. 622 644 IPR013087 -
Vium8639g00007 651 MobiDBLite consensus disorder prediction 445 459 - -
Vium8639g00007 651 Gene3D DnaJ domain 2 90 IPR036869 -
Vium8639g00007 651 Pfam DnaJ domain 12 77 IPR001623 -
Vium8639g00007 651 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8639g00007 Vium-Chr8639 17060 20549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8639g00007 1 647 C2H2 Transcription Factor Family AT1G74250 48.974 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium8639g00007 DnaJ 4.9e-20 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8639g00007 K09506 - gmx:100788305 848.195