Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8629g00017 ATGGAAAGAAATGGTGATGGGAAGGCTCAAGAATCAGAGGCTCTACCTCCCCATTCTGTTCTGAAGATGGGATTGAGAGAACGTAGCAACAGCAGCAGCATGGAGGATCCAGATGGTACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTATGCAGGAGAAAGAGCATTCTTTGAAGCAGTTATTGGAGCTTATTGATCTTCGAGAAAATGTTTTCAGTGCTGTTGGATCTCATTCCCAGGCAGTTCCAGTACTTGTTTCCCTTCTTCGGTCAGGGTCTTCAAATGTGAAGATACAGGCAGCAACTGTATTGGGTTCACTTTGTAAAGAAAATGAGTTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCACCGTTGCTTGGTCTGCTCAAGTCCAGTTCTGCTGAAGGTCAAGTGGCTGCTGCAAAGACAATTTTTGCTGTTTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTAGTTCCAGTGCTATGGGAGCAGTTGCAAAAGGGCCTGAAGACAAATGTAGTTGATAATTTATTGACTGGGGCATTGAAGAATCTCTCCAGCAACACTGATAGATTCTGGAATGCCACAATACAAGCTGGAGGGGTGGACATATTAATTAAGTTACTGAAAACAGGGCAGTCTAACACTTTAGCAAATGTGTGCTTTTTACTTGGCTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAATTGTTGACAGCTGAGGAAACTAAACAACTTCTCAAACTTTTAAGCCCTGGTAATGATGCTGCTGTCAGGGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCTCAGTGCAAAGATGCAAGAAAAGAGATAGCCAATTCCAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCATTACAAGAGAATGCGATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCGCCTGCCCAAGCTGCTGACACGTTGGGGGCTTTAGCTTCAGCTCTTATGATATATGACGACAATGCAGAATCTACCAGGGCCACAGATCCTTTGGCAGTTGAGCAGACATTACTTGAACAATTTAAAACTGGCTTGTCATTCCTTGTGCAGGAACGGACTATTGAAGCACTAGCTAGTTTGTATAGCAATCCTATACTGTCAATCAAACTTGCAAATTCTGATGCAAAACGTTTGCTTGTTGGTTTAATTACGATGGCTGCTAATGAAGTGCAAGATGAACTTCTAAAATCTCTCTTGACATTGTGCAATACTGAATGCAGTTTGTGGAGTGCACTTCAAGGCCGTGAAGGAATTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCGGAACAACAACAAGAATGTGCTGTTGCCCTCCTTTGCCTTTTATCTCATGAAAATGATGAAAGTAAATGGGCTATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAGGCAAGGGAAGACTCAGCATCAATCCTTAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGCTTTGGCTGTTGAAAAATGGAAGTCCAAATGGAAAGGAGATTGCAGCAAAGACTTTGAATCACTTAATTCATAAATCTGATACAGCAACTATCAGTCAGCTTACAACATTATTGACCAGTGATTTACCTGAATCTAAGGTTTATGTTTTAGATGCTTTGAGAAGTATGCTTTCAGTTGTTGCTCTTACTGATCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATTGATACAATGATTAAATTACTGAGCTCAACCAAGGAAGAAACTCAGGCAAAGTCTGTGTCTGCTCTGGCGGGTATTTTTGAAACAAGGAAAGATGTGCGTGAGAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCAATGAAGTTGCTTAATGTTGAATCAGAAAGTATCTTAATGGAGTCCTCGCGCTGCTTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTGGTTGCTATTGCTAGAGATGCATTACCCTCCCTAGTTTCACTAGCTAACTCTTCAGTTTTGGAAGTGGCAGAGTTGGCAACATGTGCTGTGGCAAATCTTATTTTGGATAGTGAAGTTGCTGAGAAAGCTGTTGCAGAAGAAGTCATCTTGGCTGCTACTAGAGTATTACGTGAAGGCACAATTTATGGAAAATCACAGGCTGCAGCAGCAATTGCTCGCCTTTTACATTCTAAGAGGCAAGTTGATTATGCTGTAACTGATTGTGTGAATCGAGCTGGAACTGTTCTTGCATTAGTTTCTTTCTTAGACTTTGCTGTCAATGGACTTAGTTCCACATCAGAAGCTCTAGAAGCACTTGCCATGCTGTCCAGGTCAGAAGTGAATGGTGCACACAGCAAGCCTGCTTGGGCAGTATTGGCTGAATTTCCTAAAAGCATCAGCCCAATAGTTCTGTCCATTACTGGTTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATTTTATCTCGATTATGTAAAGATCAACCTTTTGTTTTGGGAGACATTGTTGTTTCTGCCCCTGGATGTATACCTTCTATAGCTAAGAGGATAATCAATTCCTCTTCTAAAAATATAAAGGTCAAAATTGGGGGCGTGGCTGTTCTTATTTGTGCTGCTAAAGTAAATCACCAGAGGCTGGTGGAGGATCTCAATTTATCAAACTTGTCTGGTAATCTAGTTCAGTCTCTTGTTGATATACTTATTTCTTCACAGGCTACTTTGGATTATCAGCATGATGACGGCAGGGACCTTATCAGCATTTGCAGGCATACAAAAGAAGCCAATGATGGTAAATCAAGTACTGGCACCACTATTGTTTCTGGTGCCAACTTAGCTATATGGTTACTAACTGTTCTTGCTTGCCACGATGAAAAATGTAAAACTGCAATAATGGAGGCGGGTGCAATTGAGTTTCTCAGTGACAGGATTGCAAATTGTTTCTCGCTGTACAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGCTGGCAATATTGTTTCAGGATAGGGATATTATACGAGCACATGCAACCATGAAATCAATACCAGCACTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAGCAGATATTTTGCTGCTCAATCAATAGCTAGCTTAGTCTGTAATGGTAGCAGGGGAACGTTGCTGTCTGTGGCAAATTCTGGGGCAGCTGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTTTAGAATTGTCAGAGGAATTTTCTTTGGTGCATTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGCTGGTGCCACTTCTCGGAAGGCAATACCTGCTCTAGTTGATCTGCTCAAACCGATTCCAGAACGCCCGGGTGCACCATATTTAGCACTTGGGCTTTTGACTCAGCTTGCTGTAGATTGTCCATCAAATAAGATTGTAATGGTTGAGGCAGGTGCCCTAGAGGCACTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACAGAAGAAGCTGCCACAGATCTGTTAGGGATTCTGTTTAGCAGTGCAGAAATACGGAGACATGAATCAGCATTTGGAGCTGTTACTCAACTTGTAGCTGTACTACGTTTAGGAGGAAGAGCTGCAAGGTATAGGGCTGCAAAAGCTTTGGAAAGTTTATTCTCCGCTGACCATATTAGAAATGCAGAGACTGCTCGACAAGCTGTCCAGCCCTTGGTGGAGATTCTTAATACCGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTAGTTAGGCTATTGAGTGAAAACCCTTCAAAAGCACTCGCTGTTGCCGATGTTGAGATGAATGCAGTGGATGTTCTTTGTAGGATTCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGGATCCGGTCCACAATGGCTGCTGCACGTTGTGTTGAACCTCTAGTCACTCTCCTCGTAAGTGAGTTTAGTCCTTCTCACCATTCAGTTGTTCGGGCACTGGATAGGCTTGTTGATGATGAGCAACTAGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTACTTTACGGTAGGAATTATGTACTTCACGAGGCCATTTCCAGAGCTCTGGTCAAGTTGGGAAAAGACAGGCCAGCTTGCAAAATGGAAATGGTGAAAGCAGGAGTTATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCAAAAGGACCACCAGCTGCTAAAGTTGTTGAACCCCTGTTTATGTTGCTAATAAGACAAGACTTTGGGCCAGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTGCTGATTACACATTGTCTTCTCACCAAGCTATTGAACCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCACATCTTCTTTTAGAAGAACACCTTCAGAAAGATCCAGTAACACAGCATGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAACAGAGAGCTGTGAAGGCCCTAGTCAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTTATATTGCAAGCAGATCCTTCCATTCCTCATGCTTTATGGGAATCTGCAGCCTCTGTTTTGGCTAGTATTCTGCAATTTAGTTCTGAATACTACCTGGAAGTTCCAGTTGCTGTTTTGGTTAGGCTGCTTCGATCTGGCTTAGAAAGTACAGTTGTTGGTGCATTAAATGCTCTCCTTGTGTTGGAAAGTGATGATGGAACAAGTGCTGAAGCAATGGCTGAAAGTGGCGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGCGAGGAAACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCGTACCATTATCCCATTATCTCCTGGACCCACAAACCCAAGCACAACAAGCAAGGTTATTAGCAACATTGGCTCTTGGTGATCTATTTCAGAACGAGAGTCTTGCTCGGTCAAGTGATGCAGTTTCAGCCTGTCGCGCTTTAGTGAATGTGCTTGAAGACCAGCCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTACAAAACCTTGTGATGAACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGGGTTCAGGTTATTTTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTATTTTCAAATCATACCATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGACTTATGGGCTACTGGAACTGTGAACGAAGAGTATCTTAAAGCCTTAAATTCTCTTTTTAGCAACTTCCCAAGACTGAGAGCTACTGAGCCAGCAACACTTAGCATTCCCCATCTGGTTACATCCTTAAAGACAGGCTCTGAGGCTACTCAGGAGGCTGCCTTGGATGCACTTTTCCTGCTTAGGCAAGCTTGGTCAGCATGTCCAGCAGAAGTTTCAAGAGCTCAATCAATAGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGCCCCTCCTCGCTTTCAGGAGAAGGCAGAGTTTTTATTGCAGTGTTTGCCAGGAACTTTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAATCTGTCGGAAACCCAAGTGTTTTTTGCAAGCTTACGCTTGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCCAATCCGGAGTGGGAAGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAACAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTAGTAATGCTCGGAGCAGTATCTGGAGAGTACACTCTTTTGCCAGAAAGTAAGAGTGGCCCTTCGAGGAATTTAGAAATAGAATTCCAGTGGTCGAACAAGTGA 6402 0.4274 MERNGDGKAQESEALPPHSVLKMGLRERSNSSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEHSLKQLLELIDLRENVFSAVGSHSQAVPVLVSLLRSGSSNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTNVVDNLLTGALKNLSSNTDRFWNATIQAGGVDILIKLLKTGQSNTLANVCFLLGCMMMEDASVCSKLLTAEETKQLLKLLSPGNDAAVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPAQAADTLGALASALMIYDDNAESTRATDPLAVEQTLLEQFKTGLSFLVQERTIEALASLYSNPILSIKLANSDAKRLLVGLITMAANEVQDELLKSLLTLCNTECSLWSALQGREGIQLLISLLGLSSEQQQECAVALLCLLSHENDESKWAITAAGGIPPLVQILESGSAKAREDSASILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTTLLTSDLPESKVYVLDALRSMLSVVALTDLLREGSAASDAIDTMIKLLSSTKEETQAKSVSALAGIFETRKDVRESSIAVKTLWSAMKLLNVESESILMESSRCLAAIFLSIKENRDVVAIARDALPSLVSLANSSVLEVAELATCAVANLILDSEVAEKAVAEEVILAATRVLREGTIYGKSQAAAAIARLLHSKRQVDYAVTDCVNRAGTVLALVSFLDFAVNGLSSTSEALEALAMLSRSEVNGAHSKPAWAVLAEFPKSISPIVLSITGSTPVLQDKAIEILSRLCKDQPFVLGDIVVSAPGCIPSIAKRIINSSSKNIKVKIGGVAVLICAAKVNHQRLVEDLNLSNLSGNLVQSLVDILISSQATLDYQHDDGRDLISICRHTKEANDGKSSTGTTIVSGANLAIWLLTVLACHDEKCKTAIMEAGAIEFLSDRIANCFSLYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESASRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVHYPDQVALERLFRVDDIRAGATSRKAIPALVDLLKPIPERPGAPYLALGLLTQLAVDCPSNKIVMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFSADHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVTLLVSEFSPSHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPPAAKVVEPLFMLLIRQDFGPDGQHSALQVLVNILEHPQCRADYTLSSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQHVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSHYLLDPQTQAQQARLLATLALGDLFQNESLARSSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMNSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSAPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWEESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8629g00017 2133 Pfam Armadillo/beta-catenin-like repeat 85 115 IPR000225 GO:0005515
Vium8629g00017 2133 Pfam Armadillo/beta-catenin-like repeat 505 545 IPR000225 GO:0005515
Vium8629g00017 2133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Vium8629g00017 2133 SUPERFAMILY ARM repeat 594 944 IPR016024 -
Vium8629g00017 2133 SMART C2_3c 2013 2109 IPR000008 -
Vium8629g00017 2133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1807 1850 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 1463 1503 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 1293 1334 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 464 503 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 1839 1879 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 798 840 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 1421 1461 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 710 751 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 1712 1751 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 117 157 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 248 289 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 547 587 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 1211 1252 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 505 545 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 291 340 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 75 116 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 1380 1420 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 1166 1209 IPR000225 GO:0005515
Vium8629g00017 2133 SMART arm_5 1547 1589 IPR000225 GO:0005515
Vium8629g00017 2133 FunFam Coatomer beta subunit 1598 2011 - -
Vium8629g00017 2133 Gene3D - 592 993 IPR011989 -
Vium8629g00017 2133 MobiDBLite consensus disorder prediction 1 38 - -
Vium8629g00017 2133 Gene3D - 22 393 IPR011989 -
Vium8629g00017 2133 Gene3D - 1683 1778 IPR011989 -
Vium8629g00017 2133 SUPERFAMILY ARM repeat 859 1141 IPR016024 -
Vium8629g00017 2133 Coils Coil 277 297 - -
Vium8629g00017 2133 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2012 2133 - -
Vium8629g00017 2133 SUPERFAMILY ARM repeat 1168 1550 IPR016024 -
Vium8629g00017 2133 SUPERFAMILY ARM repeat 197 586 IPR016024 -
Vium8629g00017 2133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1178 1222 IPR000225 GO:0005515
Vium8629g00017 2133 Pfam C2 domain 2012 2108 IPR000008 -
Vium8629g00017 2133 Gene3D C2 domain 2011 2133 IPR035892 -
Vium8629g00017 2133 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1362 1596 - -
Vium8629g00017 2133 Gene3D - 396 591 IPR011989 -
Vium8629g00017 2133 Gene3D - 1160 1411 IPR011989 -
Vium8629g00017 2133 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2011 2130 IPR035892 -
Vium8629g00017 2133 ProSiteProfiles C2 domain profile. 1995 2110 IPR000008 -
Vium8629g00017 2133 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 9 2133 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vium8629g00017 2133 Gene3D - 1412 1682 IPR011989 -
Vium8629g00017 2133 Gene3D - 1779 2010 IPR011989 -
Vium8629g00017 2133 SUPERFAMILY ARM repeat 1562 2006 IPR016024 -
Vium8629g00017 2133 SUPERFAMILY ARM repeat 46 256 IPR016024 -
Vium8629g00017 2133 CDD C2 2014 2104 - -
Vium8629g00017 2133 Gene3D - 995 1144 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8629g00017 Vium-Chr8629 149976 160405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8629g00017 476 596 U-box Gene Family AT2G23140 41.803 6.67e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8629g00017 - - gmx:100816765 3757.61