Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8629g00010 ATGGCTTCTTCAGCGATGGAAACCTGCAAATCAGAGGATTTGCACATGCAGGTGGACGTTGAGAAGAACGCAGAGGATGTAAGGTCTCAGTGGGTTCTTAACGCTCCTGAGCCCCCAAGTCCGTGGCGTGTGGTTGCAGATTGTGTGAGGAAAACCATCTCTCACTATAAACAAAAGTTTTCCTCTCTCTCAGATCAACCCTGCACCACACTCCTCGTGTCACTTCTGCAGGCCGTTTTTCCTATTCTTGCTTGGGGCAGAAACTACACTGCCACCAAGTTCAGGAAAGATCTTCTTGCAGGCCTCACTATTGCCAGTCTCTGTATTCCCCAGAGCATTGGATATGCAACCTTGGCACATCTTGATCCTCAATATGGACTTTATACAAGTGTTGTACCACCAATTGTATATGCTGTGATGGGAACTTCTAGAGAGATAGCAATTGGTCCTGTGGCAGTGGTTTCATTGCTGTTATCCTCAATGATGGAGAAACTAGTAGACCCTGCTTCTGATCCAGTGGGTTATACAAAGCTAATTCTACTTGCTACTCTCTTGGCTGGCATCTTTCAGACTTCCTTCGGCCTCTTGAGGCTGGGGTTCCTTGTGGATTTCCTATCCCATGCTTCAATAGTTGGATTTGTGGCAGGAGCAGCCATCGTTATAGGGCTTCAACAGTTGAAGGGACTCTTAGGAATCAGCCATTTTACCACCAAAACCGACATAGTCTCTGTCATGAAAGCTGTCTGGGAAGCAGTTCATAATCCTTGGAATCCTCGAAATTTTGTCCTTGGATGCTCGTTCCTGGTCTTCATCCTAACAACGAGATTTCTGAGTAAAAAGAAGAAGAAACTGTTCTGGTTGGCATCAATTTCTCCTCTGGTGTCAGTTATTTTGTCGACTCTACTTGTGTTTTTGACAAAAGCTGATAAAAATGGAGTAAAAATCGTGAAACATGTCAAAGGAGGATTAAACCCAATCTCCATCCATGAGTTAGACTTCAACAGCCCCCACATTGGAGAAGTCGCAAAAATTGCACTAGTGGTTGCTGTCGTTGCCCTTACCGAATCTATTGCTGTTGGGCGATCTTTTGCATCCATCAAAGGATACCAACTTGATGGAAACAAGGAGATGATGTCAATAGGTCTCACAAACATCATAGGATCTTTTACCTCGTGCTACGTTGCAACTGGTTCGTTCTCCCGCACTGCTGTTAATTATGCAGCTGGGTGTGAAACTCTGGTGTCAAACATTGTGATGGCGATGACGGTCTTGGTATCGTTGCAGTTTTTGACAAAGCTCTTGTATTACACTCCTATAGCTATTCTTTCTTCTGTGATCCTATCTGCTCTCCCAGGACTTATTGACGTCAATGAAGCTTACAAAATCTGGAAGGTTGATAAGATAGATTTTCTTGCTTGTGCTGGTGCCTTCTTCGGAGTTCTGTTTGCTTCTGTGGAGATTGGTCTGCTAGTGGCGGTGGTTATATCTTTTTCAAAGATCATTCTCATCTCAATTCGACCAGGCACAGAAACTCTAGGAAAACTTCCTGGCACTAACTTTTTCTGCGATGTCTATCAGTATCCGATGGCAGTTAAGATTCCAGGGGTTATGATAATACTAGTCAAGTCTGCGTTGCTTTGTTTTGCAAATGCCAATTTCGTTAGAGAAAGGATCATCAAATGGGTCTCTGAGGAAGAATCAGAAGATGACAAAGGAAATTCAAGAACCACCATTCAACTCGTAATTCTTGACACCTCCAATTTGGTGAACATTGACACCTCTGGAATTGCTTCTCTGGAGGAACTGCACAAGAGTTTGTCTTCACATGGAAAACAGTTAGCCATTGCGAACCCTAGGTGGCAAGTGATACACAAGCTAAAGGTTTCAAACTTTGTCTCCAAATTCGGTGGCAGAGTATTTCTCACTGTTGAAGAAGCTGTTGGCTGCAAGAGCCGCTGCTAA 1962 0.4393 MASSAMETCKSEDLHMQVDVEKNAEDVRSQWVLNAPEPPSPWRVVADCVRKTISHYKQKFSSLSDQPCTTLLVSLLQAVFPILAWGRNYTATKFRKDLLAGLTIASLCIPQSIGYATLAHLDPQYGLYTSVVPPIVYAVMGTSREIAIGPVAVVSLLLSSMMEKLVDPASDPVGYTKLILLATLLAGIFQTSFGLLRLGFLVDFLSHASIVGFVAGAAIVIGLQQLKGLLGISHFTTKTDIVSVMKAVWEAVHNPWNPRNFVLGCSFLVFILTTRFLSKKKKKLFWLASISPLVSVILSTLLVFLTKADKNGVKIVKHVKGGLNPISIHELDFNSPHIGEVAKIALVVAVVALTESIAVGRSFASIKGYQLDGNKEMMSIGLTNIIGSFTSCYVATGSFSRTAVNYAAGCETLVSNIVMAMTVLVSLQFLTKLLYYTPIAILSSVILSALPGLIDVNEAYKIWKVDKIDFLACAGAFFGVLFASVEIGLLVAVVISFSKIILISIRPGTETLGKLPGTNFFCDVYQYPMAVKIPGVMIILVKSALLCFANANFVRERIIKWVSEEESEDDKGNSRTTIQLVILDTSNLVNIDTSGIASLEELHKSLSSHGKQLAIANPRWQVIHKLKVSNFVSKFGGRVFLTVEEAVGCKSRC 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8629g00010 653 ProSitePatterns SLC26A transporters signature. 123 144 IPR018045 GO:0008271|GO:0008272
Vium8629g00010 653 FunFam Sulfate transporter 31 506 652 - -
Vium8629g00010 653 CDD STAS_SulP_like_sulfate_transporter 527 641 - -
Vium8629g00010 653 Pfam STAS domain 527 646 IPR002645 -
Vium8629g00010 653 NCBIfam sulfate permease 81 643 IPR001902 GO:0016020|GO:0055085
Vium8629g00010 653 Pfam Sulfate permease family 94 474 IPR011547 GO:0016020
Vium8629g00010 653 ProSiteProfiles STAS domain profile. 537 650 IPR002645 -
Vium8629g00010 653 Gene3D STAS domain 506 652 IPR036513 -
Vium8629g00010 653 PANTHER SULFATE TRANSPORTER 68 648 IPR001902 GO:0016020|GO:0055085
Vium8629g00010 653 SUPERFAMILY SpoIIaa-like 532 647 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8629g00010 Vium-Chr8629 111932 117125 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8629g00010 28 647 Inorganic Solute Cotransporters AT5G10180 68.438 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8629g00010 K17469 - gmx:100817831 1172.15