Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8629g00009 ATGTGCAGGAGCTCTAGTAACTCAGAGATGGTAGCTTCGAAGAAAACCACGTTAGAAGAGGTTTTGGACATTGAGACCAGCATGTGTCGGTCTCAGTGGGTGTTAAATCCTCCAGATCCACCCTCCATGCCGCGTCAGGTCCTCGACAACGTCAAGGACATCCTCTTACCGCATCCTCAACCAAACACATTCTCTTCTCTCAGGAACCAGCCCTTTTCCAAACGCGCTTTTGCTTTCTTCCAAAACTTGTTTCCCATTCTTGCTTCATTCCAAAACTACAATGCTCAAAAGTTAAAGTGCGATTTCATGGCCGGCCTAACCCTTGCAATCTTCGCCATTCCTCAGTGTATGGGAAATGCAACATTGGCGCAGCTAAGTCCAGAATATGGCCTCTATACAGGAATTGTACCACCTCTTATTTATGCTTTGCTAGCGAGTTCAAGGGAAATAGTGATTGGACCTGGATCTGTAGATTCACTGCTACTTTCTTCAATGATTCAGACATTGAAAGTTCCAATTGATGGTTCTAATGGATACACTCAACTTGTTTTCACTGTGACATTTTTTGCTGGCATCTTTCAAGTTGCATTCGGCCTCTTTAGGTTTGGTTTCCTGGTGGAATATATTTCCCAATCGACGATCTTAGGGTTCTTAGCAGCAGCTGCTGTGGGCATTGGACTACAACAATTGAAAGGATTATTTGGGATCGTTAACTTTACCAACAAAACTGCTTTATTTTCCGTGCTCAAATCTCTTTGGACATCCTTCAGAAACCAATCAGCGTGGCATCCCTACAACTTCGTCATTGGATTCTCATTTCTGTGCTTCATCCTATTAGCCAGATTCCTGGGTAAAAGGAACAAGAAACTGATCTGGTTGTCACACGTTGCTCCTCTTCTTTCAATTATCGTATCCTCTATCATTGCGTACAAAATAAATGTCGACGAGGCTCATGTGAAGGACTACAGAGTTGAAGTGTTGGGACCAATTAAAGGAGGGGGTAGCTTGAATCCAAGCTCATTCAATCAGTTAACATTTGATACCAAAGTTGTCGGTCATTTGATCAGAATAGGCTTGACCATTGCTATTATTTCAATCACGGGATCGATTGCTGTTGGACGATCATTTGCATCTCTAAAAGGACACAGCATTGATCCGAACAGAGAAGTGGTATCATTGGGCATAATGAACATTGTTGGATCCTTAACTTCTTGCTATATTGCATCAGGGTCTTTGTCACGTACTGCTGTAAACTACAATGCTGGATCAGAAACAATGGTGTCGAACATAGTGATGGCACTGACGGTGCTGTTGTCGCTTAAATTTTTGACAGGACTTTTGTATTTCACTCCGAAAGCAATCTTAGCAGCAATAATTCTGTCGGCTGTACCAGGACTGATTGACCTAAACAAAGCGTCTGAAATTTGGAAGGTTGATAAAATGGATTTCCTTGCTTGTGCTGGAGCCTTCTTCGGCGTCTTGTTTGCATCTGCAGAAATAGGCCTTGCAGTTGGGATAACGGTTTCATTCGCGAAGATAATTGTAACCTCAATTCAACCTGCTATAGCGGTTATTGGAAGGCTTCCAGGAACCGATTCATTCGGCGATGTTCAACAGTATCCAATGGCACTCAACACTCCCGGAGTTTTCATCGTCTCTCTAAAATCTGCATGGCTTTGTTTTGCAAATGCAAATCTTGTGGAAGAAATGATTGAGAGATGGATGACCGATGAAAAAGCTTATAAGCATGGCAGACCAGGACAAAACACATTCCATCACCTCATCATAGATGCCTCAAGTCTTACCAACATTGACACCACTGGAATTGCTTGTCTGGTAGAGCTCAATAAGAATATGGCTTCACGCGGAATAAAGTTAGCTATCGCTAACCCTAGGTGGCATGTAATTCACAAGCTAAGATTAGCTAATTTCGTCAGCAAAATTGGAGGAAGGGTTTTCCTTTCTGTGGTGGAAGCAGTGGATGCTTGTGTTGCGACTAAAATGGTTGCTGTATGA 2016 0.4276 MCRSSSNSEMVASKKTTLEEVLDIETSMCRSQWVLNPPDPPSMPRQVLDNVKDILLPHPQPNTFSSLRNQPFSKRAFAFFQNLFPILASFQNYNAQKLKCDFMAGLTLAIFAIPQCMGNATLAQLSPEYGLYTGIVPPLIYALLASSREIVIGPGSVDSLLLSSMIQTLKVPIDGSNGYTQLVFTVTFFAGIFQVAFGLFRFGFLVEYISQSTILGFLAAAAVGIGLQQLKGLFGIVNFTNKTALFSVLKSLWTSFRNQSAWHPYNFVIGFSFLCFILLARFLGKRNKKLIWLSHVAPLLSIIVSSIIAYKINVDEAHVKDYRVEVLGPIKGGGSLNPSSFNQLTFDTKVVGHLIRIGLTIAIISITGSIAVGRSFASLKGHSIDPNREVVSLGIMNIVGSLTSCYIASGSLSRTAVNYNAGSETMVSNIVMALTVLLSLKFLTGLLYFTPKAILAAIILSAVPGLIDLNKASEIWKVDKMDFLACAGAFFGVLFASAEIGLAVGITVSFAKIIVTSIQPAIAVIGRLPGTDSFGDVQQYPMALNTPGVFIVSLKSAWLCFANANLVEEMIERWMTDEKAYKHGRPGQNTFHHLIIDASSLTNIDTTGIACLVELNKNMASRGIKLAIANPRWHVIHKLRLANFVSKIGGRVFLSVVEAVDACVATKMVAV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8629g00009 671 CDD STAS_SulP_like_sulfate_transporter 540 657 - -
Vium8629g00009 671 SUPERFAMILY SpoIIaa-like 546 663 IPR036513 -
Vium8629g00009 671 Pfam Sulfate permease family 98 487 IPR011547 GO:0016020
Vium8629g00009 671 Gene3D STAS domain 519 667 IPR036513 -
Vium8629g00009 671 Pfam STAS domain 540 659 IPR002645 -
Vium8629g00009 671 PANTHER SULFATE TRANSPORTER 65 663 IPR001902 GO:0016020|GO:0055085
Vium8629g00009 671 NCBIfam sulfate permease 85 655 IPR001902 GO:0016020|GO:0055085
Vium8629g00009 671 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271|GO:0008272
Vium8629g00009 671 ProSiteProfiles STAS domain profile. 559 663 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8629g00009 Vium-Chr8629 98885 105891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8629g00009 30 668 Inorganic Solute Cotransporters AT5G10180 53.125 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8629g00009 K17469 - gmx:100817841 1088.94