Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8629g00003 ATGGATATATACAATAACAGTAGCATCGTGCTGTCAGATTTCTTAGACCCCTGCAATGGTCAAGAGCTTATGAAAGCACTTGAACCTTTTATGAAAACTGATTCTTCCATAACTTACCCTTCCTTATCTTCTCCAAACTTCTCCTCAAACTATGACCAAAAGCCTTCCATCAAACTCAACCAACTCACCCCATCTCAAACGTTCCAGATTCAAGCCCAAATCCAGGTTACACGGGCCCAGTTTCTTAGCCCAAAGCTTGTTCCCATGAAGCAAGTGGGTGGTCGTGTTCTTTCCAAGCCCACAAAGCTTTACCGTGGGGTGAGGCAGAGGCACTGGGGCAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGCACTCGTCTCTGGCTTGGTACGTTCGAAACCGCTGAAGAAGCTGCTTTGGCATACGACAACGCAGCGTTTAAGCTCAGAGGAGAAAACGCCAGGCTCAACTTCCCTCATCTACGTCACCATGGACCAAGCGTCTATGGTGAGCTCGGGACCTACAAGCCTCTCCCCTCTGCAGTGGACGCCAAGCTCGAAGCGATTTGTAAAAGCTTGGCCATGACTACACCCAAGGAAGAAACAGCAACAACATCGGAGTTTGAGGATGTTAAGGTGGGGATTCAAACAACATCCTCGCCCTTGTCGGATGAATATTCTTCCTCTTCTTCTGCTGGCTCCTCTTCACCCGAATCCGATATCACTTTCTTGGATTTCTCGGATTCTTATGAAGCAATGGACAATCTTGGGTTGGACCTTGAGAAGTACCCTTCTGTGGAGATTGATTGGGCAGCTTTATCGGAGTCATCATGA 837 0.4815 MDIYNNSSIVLSDFLDPCNGQELMKALEPFMKTDSSITYPSLSSPNFSSNYDQKPSIKLNQLTPSQTFQIQAQIQVTRAQFLSPKLVPMKQVGGRVLSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGENARLNFPHLRHHGPSVYGELGTYKPLPSAVDAKLEAICKSLAMTTPKEETATTSEFEDVKVGIQTTSSPLSDEYSSSSSAGSSSPESDITFLDFSDSYEAMDNLGLDLEKYPSVEIDWAALSESS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8629g00003 278 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Vium8629g00003 278 MobiDBLite consensus disorder prediction 220 241 - -
Vium8629g00003 278 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
Vium8629g00003 278 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Vium8629g00003 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 24 275 - -
Vium8629g00003 278 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Vium8629g00003 278 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Vium8629g00003 278 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Vium8629g00003 278 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Vium8629g00003 278 CDD AP2 102 162 IPR001471 GO:0003700|GO:0006355
Vium8629g00003 278 FunFam Ethylene-responsive transcription factor 2 102 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8629g00003 Vium-Chr8629 35234 36603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8629g00003 1 278 AP2-EREBP Transcription Factor Family AT4G39780 50.523 2.29e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium8629g00003 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8629g00003 K09286 - gmx:106796800 381.719