Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium861g00002 ATGGCTTTGGAGAACTTCTACAACATATTTGGTGCCACAAAGCTAAAAAGTCAGTTTTGGACTTCATGGCAGCCATTAGAATCACCATGCTTGTTGGAGCATGTGATTTTACCTGTGGAACTCGGGTTCTCTGTGATCTTGTTAGTCCAACTCCTGAGAAAATATGTGAGCCTGATCAGAAAGCAAACCAAGGTTCCAGATGGTGCCACAAAATCGATGCATCCACCAGCAATCAAACATGGCTTTGCTTACAAAATCAGCATTGTCTGCAACACACTGTTGCTGGCTGTTCATGCATCACTGCTGCTACTGATGCTGAATCAAGAGACTCAATGCACCTCAAAACTTCAGGCTTTCACATCAGAAATAGTTCAAGTGCTATCATGGGTAACTAGTCTTGTAGCAATATGCAAGATATCAAAATCAAGCACACATTTCCCTTGGATTCTGAGGGCTTGGTGGCTTTGCAGTTTCATTGTGTGCATTATAAGCACAGGCCTTCATGTTCATTTCAGTGTCACCAACAGTGGTCAGATTAGCATCAGAGAATATGCAGATTTCCTTGGTTTGCTTGCTTCAACATGCCTTCTGGTTATTTCCACAAGTGGGAAGACAGGCACTGTGATGCTTGCCACAAATGGTGCAGCTGAACCACTTCTTGGAGAGAAAACTGAGAAACATTCAGAGTGTCTAAGGGAATCTCCATACGGAAAAGCCTCACTTCTCCAACTCATTAATTTCTCATGGCTTAACCCCTTGTTTGCAATAGGGTATAAGAAACCCCTTGAACAGAGTGACATTCCTGATGTTGACATCAAAGACTCTGCTGAGTTTCTGACCTGTTCCTTTGATGAGAGCCTTAGAAAAGTCAAGGAGGAAGATGGCACTGCAAACCCTTCTATCTACAAGGCAATCTACCTGTTCGCTAGGAAGAAAGCAGCAATGAATGCATTGTTTGCAGTGGTAAATGCTTCAGCATCTTATGTTGGTCCTTACTTGATAACAGACTTTGTGGATTTCTTGGGAGAGAAGGAAACTCGTGGCTTGAAGAGTGGATACCTTCTGTCACTGGCTTTTCTCTGTGCCAAAATGGTTGAGACCATAGCTCAGAGGCAATGGATTTTTGGAGCTAGGCAATTAGGCCTTCGCCTCAGAGCTGCGTTGATATCTCATATATATCAGAAGGGTCTGCATCTGTCGAGTAGATCGCGCCAAAGTCACACGGGTGGTGAGATAATGAACTACATGAGTGTAGATGTGCAGAGAATCACAGATTTTGTTTGGTATGTAAATGTCATATGGATGCTGCCAATACAAATTTCCTTAGCAGTGTTCATTCTGCATACAAATCTAGGACTAGGTTCATTGGCTGCACTAGCTGCTACGTTGGGAGTGATGACTTTGAACATACCTCTAACAAAAATACAGAAAAGATACCAAGCCAAGATCATGGATGCCAAGGACAACAGGATGAAAGCCACTTCAGAAGTCCTCAGAAACATGAGGACTCTGAAGCTTCAAGCATGGGACACTCAATTTTCTCAAAGGGTAGAAGCACTGAGGAATGTAGAGTATAATTGGCTAACAAAGTCCTTGAGGCAAGCAGCGTTTTCTGCTTTTATCTTTTGGGGATCACCTACATTCATCTCTGTGATAACTTTTTGGGCATGCATGTTCATGGGGATTGAACTGACAGCAGGAAGGGTCTTGTCTGCATTTGCCACGTTCAGAATGCTGCAGGATCCTATATTCAGCTTGCCTGATTTGCTCAATGTGATTGCTCAAGGAAAAGTCTCTGTTGATAGGATCGCTTCCTTCCTTCGTGAGGAAGAAATCCAGCATGATGTCATTGAAAATGTTGCAAAGGACAGAACAGAATTTGATGTAGTTATTGAGAGAGGGAGATTCAGCTGGGATCCTGATTCAACAACTCCAACCATTGATGAAATAGAGTTGAAAGTTAAGAGGGGAATGAAGGTGGCAGTTTGTGGATCTGTAGGTTCAGGAAAGTCTAGTCTGCTATCAGGCATTTTGGGAGAAATATATAAACAGTCTGGGAATGTTAAGATCAGTGGAACAAAAGCTTATGTTCAACAATCTGCATGGATACTGACTGGAAACATAAGGGACAACATCACCTTTGGAAAAGAGTACAATGCTGATAAGTATGACAAAACTGTTGAGGCATGTGCATTGAAAAAGGACTTTGAGCTATTCTCATGTGGTGACATGACAGAGATAGGAGAAAGAGGGATTAACATGAGTGGGGGACAGAAGCAAAGGATACAGATTGCTAGAGCAGTTTACCAGGATGCTGACATATACCTTTTTGATGACCCTTTCAGTGCTGTTGATGCTCATACTGGTACTCACCTCTTCAAGGAGTGCCTTATGGGGATTCTCAAAGAGAAAACTATAATTTTTGTTACACACCAAGTTGAGTTTCTCCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATAGCACAAGCTGGAAAATTTGAAGATCTTCTAAAGCAAAATATAGGATTTGAAGTTTTAGTTGGTGCTCACAGCAAAGCTCTGGAGTCAATTGTTGTTGCTGAAAACTCAAGTAGAACAAGTTTCAATTCAATAGCTGAGGAAGGTGAATCCAACTTCAACTCCAAGTCAAGTCTTCAGCATGACAAAGTGCAAGACAATCCTCCAGAGGACAAAGGAAATGATGGAAAGTTGGTGCAAGAAGAGGAAAGAGAAACAGGAAGCATAGCAAAAGAAGTTTACTGGACTTATTTGACCACTGTCAAAGGAGGAATGTTTGTTCCTCTCATTATCTTGGCACAATCTTCATTCCAAATACTTCAGATTGCCAGTAACTATTGGATGGCTTGGGTTTGCCCCACAAGTAGTGATGCCAAGCCTATATATGACATGAATTTCATACTACTTATTTATATGGCACTCTCAGTTGCTGGTTCGTTCTGTGTTCTGCTGCGAGCCATGATGGTGTTAAATGCTGGACTTTGGACATCACAGACACTTTTCACAAAGATGTTGCATAGTGTGCTCCGTGCCCCCATGTCCTTTTTTGATTCTACCCCAGCTGGAAGAATCTTGAATAGGGCTTCCACAGATCAAAGTGTGCTAGACTTGGAAATGGCAAACAGAGTAGGATGGTGTGCTTTCTCAATAATACAGATTCTAGGAACCATTGCCGTGATGTGTCAGGTGGCATGGCAAGTATTTGTCATCTTCATTCCAGTAACTGCAGTCTGCATATGGTATCAAAGATATTACACCCCTACAGCTAGAGAACTGGCTCGCTTAGCACAGATACAGATCACTCCAATTCTCCACCATTTTTCAGAATCTTTGGCAGGAGCAGCATCAATAAGAGCTTTTGATCAAGAGGGCCGTTTCATATACACCAATCTTGTCCTTGTGGATGGCTTCTCAAGACCATGGTTTCATAATGTTTCTGCAATGGAATGGCTTTCTTTCAGATTGAATTTACTGTCAAATTTTGTTTTTGCCTTCTCACTGGTCATGCTTGTGAGCCTCCCTGAAGGAATAATCAACCCAAGTATTGCAGGACTGGCAGTAACATATGGGATCAATCTGAATGTGCTGCAAGCTTCAGTTATATGGAACATATGCAACGCAGAAAACAAGATGATATCAGTTGAAAGAATTATTCAGTACACAAATATAAAAAGTGAAGCACCTCTTGTGATTGAAGACAGCAGGCCACCAAGCAACTGGCCAGAAACTGGAACAATATGTTTCAAAAATTTACAGATACGTTATGCTGAACATCTGCCATCTGTGTTGAAAAACATCACTTGCACATTTCCTGGGAGGAAGAAAGTTGGTGTTGTTGGGCGTACTGGGAGTGGAAAATCAACCCTCATACAAGCCATTTTCAGGATTGTTGAACCAAGAGAAGGAAGCATTATCATTGACAATGTTGATATATGCAAGATAGGCCTCCATGACTTAAGGTCAAGGCTTAGCATTATCCCACAAGACCCTGCCTTGTTTGAAGGCACTGTCAGAGGAAACCTGGACCCTCTTCAGCAATACTCTGACATTGAAGTGTGGGAGGCTCTAGACAAATGTCAACTGGGCCACCTAGTGAGGGCCAAGGAAGAGAAGTTGGAGTCCCCAGTGGTTGAAAATGGTGATAACTGGAGTGTTGGCCAAAGGCAACTATTTTGCCTTGGAAGAGCCCTGCTGAAAAGAAGCAGCATACTAGTGCTGGATGAAGCAACAGCCTCGGTAGATTCTGCAACTGATGGAGTGTTACAGAACATCATAAGTCAAGAGTTTAAAGATAGAACTGTTGTCACAATAGCTCACAGAATCCACACAGTTATTGATAGCGATTTGGTTTTGGTGCTCAGTGATGGGAGAATTGCAGAGTATGATGAACCATCAAGGTTACTTGAGAGAGAAGATTCCTTCTTCTTTAAACTAATAAAGGAGTATTCTGGAAGATCACAAAGCTTAAACAGTTTGGCAATACAACATGTCCAAAGTAGGGAACAATTATAG 4539 0.4212 MALENFYNIFGATKLKSQFWTSWQPLESPCLLEHVILPVELGFSVILLVQLLRKYVSLIRKQTKVPDGATKSMHPPAIKHGFAYKISIVCNTLLLAVHASLLLLMLNQETQCTSKLQAFTSEIVQVLSWVTSLVAICKISKSSTHFPWILRAWWLCSFIVCIISTGLHVHFSVTNSGQISIREYADFLGLLASTCLLVISTSGKTGTVMLATNGAAEPLLGEKTEKHSECLRESPYGKASLLQLINFSWLNPLFAIGYKKPLEQSDIPDVDIKDSAEFLTCSFDESLRKVKEEDGTANPSIYKAIYLFARKKAAMNALFAVVNASASYVGPYLITDFVDFLGEKETRGLKSGYLLSLAFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYQKGLHLSSRSRQSHTGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLGVMTLNIPLTKIQKRYQAKIMDAKDNRMKATSEVLRNMRTLKLQAWDTQFSQRVEALRNVEYNWLTKSLRQAAFSAFIFWGSPTFISVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLREEEIQHDVIENVAKDRTEFDVVIERGRFSWDPDSTTPTIDEIELKVKRGMKVAVCGSVGSGKSSLLSGILGEIYKQSGNVKISGTKAYVQQSAWILTGNIRDNITFGKEYNADKYDKTVEACALKKDFELFSCGDMTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTIIFVTHQVEFLPAADLILVMQNGRIAQAGKFEDLLKQNIGFEVLVGAHSKALESIVVAENSSRTSFNSIAEEGESNFNSKSSLQHDKVQDNPPEDKGNDGKLVQEEERETGSIAKEVYWTYLTTVKGGMFVPLIILAQSSFQILQIASNYWMAWVCPTSSDAKPIYDMNFILLIYMALSVAGSFCVLLRAMMVLNAGLWTSQTLFTKMLHSVLRAPMSFFDSTPAGRILNRASTDQSVLDLEMANRVGWCAFSIIQILGTIAVMCQVAWQVFVIFIPVTAVCIWYQRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEGRFIYTNLVLVDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERIIQYTNIKSEAPLVIEDSRPPSNWPETGTICFKNLQIRYAEHLPSVLKNITCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDNVDICKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLQQYSDIEVWEALDKCQLGHLVRAKEEKLESPVVENGDNWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVLQNIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDEPSRLLEREDSFFFKLIKEYSGRSQSLNSLAIQHVQSREQL 1512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium861g00002 1512 FunFam ABC transporter C family member 5 899 1236 - -
Vium861g00002 1512 Pfam ABC transporter 1272 1420 IPR003439 GO:0005524
Vium861g00002 1512 MobiDBLite consensus disorder prediction 892 912 - -
Vium861g00002 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 852 IPR003439 GO:0005524
Vium861g00002 1512 Pfam ABC transporter transmembrane region 316 578 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium861g00002 1512 Pfam ABC transporter transmembrane region 947 1182 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium861g00002 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1257 1489 IPR003439 GO:0005524
Vium861g00002 1512 Gene3D ABC transporter type 1, transmembrane domain 900 1236 IPR036640 GO:0005524|GO:0016020
Vium861g00002 1512 Gene3D ABC transporter type 1, transmembrane domain 285 613 IPR036640 GO:0005524|GO:0016020
Vium861g00002 1512 MobiDBLite consensus disorder prediction 879 912 - -
Vium861g00002 1512 Gene3D - 1238 1490 IPR027417 -
Vium861g00002 1512 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524|GO:0016887
Vium861g00002 1512 CDD ABC_6TM_ABCC_D2 936 1230 IPR044726 GO:0140359
Vium861g00002 1512 Pfam ABC transporter 648 781 IPR003439 GO:0005524
Vium861g00002 1512 CDD ABCC_MRP_domain1 629 829 - -
Vium861g00002 1512 FunFam ABC transporter C family member 5 614 861 - -
Vium861g00002 1512 SMART AAA_5 1281 1473 IPR003593 GO:0016887
Vium861g00002 1512 SMART AAA_5 656 829 IPR003593 GO:0016887
Vium861g00002 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 845 IPR027417 -
Vium861g00002 1512 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 238 1492 - -
Vium861g00002 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 938 1218 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium861g00002 1512 FunFam ABC transporter C family member 3 1238 1490 - -
Vium861g00002 1512 CDD ABCC_MRP_domain2 1253 1473 - -
Vium861g00002 1512 FunFam ABC transporter C family member 10 297 611 - -
Vium861g00002 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 317 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium861g00002 1512 SUPERFAMILY ABC transporter transmembrane region 310 611 IPR036640 GO:0005524|GO:0016020
Vium861g00002 1512 SUPERFAMILY ABC transporter transmembrane region 938 1237 IPR036640 GO:0005524|GO:0016020
Vium861g00002 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1246 1483 IPR027417 -
Vium861g00002 1512 Gene3D - 625 855 IPR027417 -
Vium861g00002 1512 Coils Coil 476 496 - -
Vium861g00002 1512 CDD ABC_6TM_ABCC_D1 317 603 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium861g00002 Vium-Chr861 25890 37063 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium861g00002 608 843 Calmodulin-binding Proteins AT2G36910 30.435 2.23e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium861g00002 - - gmx:100809749 2747.23