Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8618g00004 ATGCATGTGGAGAATGCTCGAGAAGTCCCAGAGTATGAGATTGATCCTTCTGAACTCGATTTTACTAATAGTGTTTGCATAACAAAGGGAACTTTCCGGATTGCATTATGGCGTGGAACTCAGGTTGCTGTCAAGACACTTGGGGAGGAAGTGTTCGCTGATGATGATAAAGTAAAAGCATTTCATGATGAGCTTACATTGCTTGAGAAAATAAGGCATCCAAATGTAGTTCAGTTTTTGGGTGCTGTAACCCAAAGCACCCCAATGATTATCGTCACAGAATTTCTACCCCAGGGGGATCTTCGTGCATACATGAAGCGGAAATGTGCATTAAAACCAGTAACAGCTGTAAAATTTGCACTTGATATTGCTAGGGGTATGAACTATTTGCACGAACATAAACCTGAAGCCATTATACACCGAGATCTTGAGCCTTCGTATGTTTTACACACTCCTACCCTGTCTAGTTGA 471 0.4161 MHVENAREVPEYEIDPSELDFTNSVCITKGTFRIALWRGTQVAVKTLGEEVFADDDKVKAFHDELTLLEKIRHPNVVQFLGAVTQSTPMIIVTEFLPQGDLRAYMKRKCALKPVTAVKFALDIARGMNYLHEHKPEAIIHRDLEPSYVLHTPTLSS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8618g00004 156 SUPERFAMILY Protein kinase-like (PK-like) 29 151 IPR011009 -
Vium8618g00004 156 ProSiteProfiles Protein kinase domain profile. 1 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8618g00004 156 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 150 - -
Vium8618g00004 156 FunFam serine/threonine-protein kinase STY46-like 14 97 - -
Vium8618g00004 156 Gene3D Transferase(Phosphotransferase) domain 1 19 155 - -
Vium8618g00004 156 Pfam Protein tyrosine and serine/threonine kinase 38 148 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8618g00004 Vium-Chr8618 5855 7979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8618g00004 1 149 MAP Kinase Kinase Kinase AT3G58760 74.497 7.31e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vium8618g00004 PK_Tyr_Ser-Thr 2.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8618g00004 - - vum:124847290 317.005