Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8618g00002 ATGCATGTGGAGAATGCTCGAGAAGTCCCAGAGTATGAGATTGATCCTTCTGAACTCGATTTTACTAATAGTGTTTGCATAACAAAGGGAACTTTCCGGATTGCATTATGGCGTGGAACTCAGGTTGCTGTCAAGACACTTGGGGAGGAAGTGTTCGCTGATGATGATAAAGTAAAAGCATTTCATGATGAGCTTACATTGCTTGAGAAAATAAGGCATCCAAATGTAGTTCAGTTTTTGGGTGCTGTAACCCAAAGCACCCCAATGATTATCGTCACAGAATTTCTACCCCAGGGGGATCTTCGTGCATACATGAAGCGGAAATGTGCATTAAAACCAGTAACAGCTGTAAAATTTGCACTTGATATTGCTAGGGGTATGAACTATTTGCACGAACATAAACCTGAAGCCATTATACACCGAGATCTTGAGCCTTCACTTTGGAGTTAG 450 0.4156 MHVENAREVPEYEIDPSELDFTNSVCITKGTFRIALWRGTQVAVKTLGEEVFADDDKVKAFHDELTLLEKIRHPNVVQFLGAVTQSTPMIIVTEFLPQGDLRAYMKRKCALKPVTAVKFALDIARGMNYLHEHKPEAIIHRDLEPSLWS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8618g00002 149 FunFam serine/threonine-protein kinase STY46-like 14 97 - -
Vium8618g00002 149 Gene3D Transferase(Phosphotransferase) domain 1 19 146 - -
Vium8618g00002 149 Pfam Protein tyrosine and serine/threonine kinase 38 143 IPR001245 GO:0004672|GO:0006468
Vium8618g00002 149 SUPERFAMILY Protein kinase-like (PK-like) 29 146 IPR011009 -
Vium8618g00002 149 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 145 - -
Vium8618g00002 149 ProSiteProfiles Protein kinase domain profile. 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8618g00002 Vium-Chr8618 5793 7979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8618g00002 1 145 MAP Kinase Kinase Kinase AT3G58760 75.862 2.94e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vium8618g00002 PK_Tyr_Ser-Thr 5.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8618g00002 - - vum:124847290 296.975