Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8618g00001 ATGGAAACCAAGAAGCTTCAGCTTCGCTTCTCGCTCGGCCGGCAATCCTCCCTAGCGCCGGAGCGCGGCGGCGCGGGCGACCTGTCGGAGGCGCTGGATCCGACGGTTCGGTTGATGTATCTGGCCAACGAAGGAGACTTGGACGGGATCGAGGAACTTCTGGACGCGGGGAGCGACGTCAATTTCACCGACATTGACGGCCGCACCGCGCTCCACGTCGCCGCCTGCCAGGGACGCACCGACGTTGTTGACTTGCTGCTCCGACGAGGCGCTGAAGTTGATCCGCGAGACCGCTGGGGCAGCACCCCTCTAGCTGATGCAATGTACTACAAAAACCACGACATCGTGAAGCTTTTGGAGAAACACGGTGCAAAACCTCCAATAACTCCCATGCATGTGGAGAATGCTCGAGAAGTCCCAGAGTATGAGATTGATCCTTCTGAACTCGATTTTACTAATAGTGTTTGCATAACAAAGGGAACTTTCCGGATTGCATTATGGCGTGGAACTCAGGTTGCTGTCAAGACACTTGGGGAGGAAGTGTTCGCTGATGATGATAAAGTAAAAGCATTTCATGATGAGCTTACATTGCTTGAGAAAATAAGGCATCCAAATGTAGTTCAGTTTTTGGGTGCTGTAACCCAAAGCACCCCAATGATTATCGTCACAGAATTTCTACCCCAGGGGGATCTTCGTGCCTACATGAAGCGGAAATGTGCATTAAAACCAGTAACAGCTGTAAAATTTGCACTTGATATTGCTAGGGGTATGAACTATTTGCACGAACATAAACCTGAAGCCATTATACACCGAGATCTTGAGCCTTCAAATATTTTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTTAAAGTCGCTAAAACAGTCAAGGAAGACAAACCCGTGACAAGCCTGGATACATCATGGCGATACGTTGCACCAGAAGTCTATAGAAATGAGGAATACGACACAAAAGTGGATGTGTTTTCTTTTGCTCTGATATTACAGGAGATGATTGAAGGTTGTCCACCGTTCTATGAAAAACCAGAAAACGAAGTTCCTAAAGCGTATGTTGAAAATGAGCGCCCACCATTTAGAGCGTTGCCAAAGCTTTATGCTTATGGACTAAAAGCGTTAATTGAGGAATGCTGGGATGAAAAACCACAGAGAAGGCCAACATTTAGGCAAGTAATTAGGAGATTGGAAGACATCAACGGCCATCTTGTACAAAAGAGGCGCTGGAAGGTACCCCTTTTTTGTGCATACATTTATTTGATCAACATTAGACCTAGTTGTGATAGTGTAATTTTGACATAA 1338 0.4679 METKKLQLRFSLGRQSSLAPERGGAGDLSEALDPTVRLMYLANEGDLDGIEELLDAGSDVNFTDIDGRTALHVAACQGRTDVVDLLLRRGAEVDPRDRWGSTPLADAMYYKNHDIVKLLEKHGAKPPITPMHVENAREVPEYEIDPSELDFTNSVCITKGTFRIALWRGTQVAVKTLGEEVFADDDKVKAFHDELTLLEKIRHPNVVQFLGAVTQSTPMIIVTEFLPQGDLRAYMKRKCALKPVTAVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVAKTVKEDKPVTSLDTSWRYVAPEVYRNEEYDTKVDVFSFALILQEMIEGCPPFYEKPENEVPKAYVENERPPFRALPKLYAYGLKALIEECWDEKPQRRPTFRQVIRRLEDINGHLVQKRRWKVPLFCAYIYLINIRPSCDSVILT 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8618g00001 445 PIRSF ILK 2 428 - -
Vium8618g00001 445 FunFam serine/threonine-protein kinase STY46-like 144 227 - -
Vium8618g00001 445 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 131 412 - -
Vium8618g00001 445 ProSiteProfiles Ankyrin repeat region circular profile. 66 98 - -
Vium8618g00001 445 ProSiteProfiles Protein kinase domain profile. 151 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8618g00001 445 FunFam Integrin-linked protein kinase family 17 142 - -
Vium8618g00001 445 Pfam Ankyrin repeats (3 copies) 38 126 IPR002110 GO:0005515
Vium8618g00001 445 CDD STKc_MAP3K-like 165 408 - -
Vium8618g00001 445 Gene3D - 28 139 IPR036770 -
Vium8618g00001 445 Gene3D Transferase(Phosphotransferase) domain 1 150 415 - -
Vium8618g00001 445 SUPERFAMILY Ankyrin repeat 37 129 IPR036770 -
Vium8618g00001 445 SMART ANK_2a 66 95 IPR002110 GO:0005515
Vium8618g00001 445 SMART ANK_2a 99 128 IPR002110 GO:0005515
Vium8618g00001 445 SMART ANK_2a 32 62 IPR002110 GO:0005515
Vium8618g00001 445 SUPERFAMILY Protein kinase-like (PK-like) 157 409 IPR011009 -
Vium8618g00001 445 ProSiteProfiles Ankyrin repeat profile. 66 98 IPR002110 GO:0005515
Vium8618g00001 445 FunFam Os01g0748600 protein 137 427 - -
Vium8618g00001 445 Pfam Protein tyrosine and serine/threonine kinase 168 408 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8618g00001 Vium-Chr8618 7 5409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8618g00001 1 434 MAP Kinase Kinase Kinase AT4G18950 65.011 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vium8618g00001 PK_Tyr_Ser-Thr 4.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8618g00001 - - gmx:100795964 796.193