Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8604g00002 ATGGAGCAGTTGAAATTGGCTACAAATTCTGACGCCAAAGAGGATAACCCTTTGGGGAACAAGCCAAAAAATAGCAATGCACTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTCGATGGGATCCAGTTGGAGCATGTCGGCCAATAATTGAAGAAGCGCCTGTTTTTTATCCGACTATTGAAGAATTTGAAGACACTCTCAGTTACATAGCAAAGATACGACCCCTAGCTGAGCACCATGGCATATGTAGGATTGTTCCTCCGGCTTGTTGGGCTCCACCTTGTCCACTTAAGGAGAAAGATCTATGGGAAAATGCTGAATTTCCCACCCGTATTCAGCAAATTGATTTGCTTCAAAATAGGGAACCTATGAAGAAAAAATGTAGGGGAAGGAAGCGAAAACGTAGAAGGCTCTCCAGAACAGGCACATGTAGGAGGAAGCCTGCCAATGCAGCTTCTCATGCTAAGAATGCTTCTGATTCTGAAGAGAAATTTGGGTTCCAATCAGGATCAGACTTCACGCTTAAAGACTTTCAGCAATATGCTGATTATTTTAAGGAATGCTATTTTGGGTTGAAAGATGCTGATAGAGACAGAACAGTTGGTAACAGTAACCATCAGAAGAGATGGGAGCCCTCTGAGGAAGAAATTGAAGGTGAATACTGGCGAATAGTTGAGCAACCAAGTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCATAACAACGAGTGACTCAGCTCAATATGCCCTGTCTGGTTGGAATCTGAACAATTTCGCCCGACTGCCAGGTTCTGTACTAAGCTACGAAGGAAGCGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCACTAAACTATTTGCACTGGGGTGACCCTAAAGTATGGTATGGTGTACCTGGAAGCCATGCACCAGCCTTGGAAAATGCAATGAGGAAACACTTGCCTGATTTATTTGAGGAACAACCACATCTACTAAATGAACTGGTTACCCAATTTTCTCCTTCTATTCTTAAATCTGAGGGAGTACCTGTGTATCGCACAGTCCAGCATTCTGGGGAGTTTGTTATTACCTTTCCGAGGGCATATCATTCTGGCTTTAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAGAATGCTGTTGAGATTTACAGTTCACAATGCCGTAAGACATCGTTGTCCCATGACAAGCTGTTATTTGGATCAGCACTGGAAGGTGTACGGGCCATTACAGAGATAGCTCTTGGAAAGGAATCTCCGAAAAATTTGAAATGGAGTAGTGTCTGTGGGAAAGATGGAGATCTTACCAAGGCAGTTAAGGCAAGGATAAAGATGGAAGATGAAAGGCTAGATTGTCTTCCAACTCATCTTAAGTTACTCAAGATGAACAATGACTTTGATTTGTACACGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACTTATCTGCTGTAGGTTGTGAGTGCTCTCCTGACAGATATTCTTGTCTTAAGCATGCTAATTTGTTCTGCTCATGCGCAATGGAGAAAAGATTTGTTCTGCTACGATATACTAGAAATGAGCTAACTAAACTGCTTGAAGCATTAGAAGGAGAGTCACATGAAATTAAGGTGTGGGCAAATAAAAACTGTGGAAAGGTTTCTGCCAATGCCAATGAGGTTTGCATAGATAAATCAGATGTTGAGAAAGATATCTACAAAACCAAGAATTGTGAAGAAATAGATAGCTTAACTGGCTGTGAAGGAACCAAGGATAGGTCAAATTTAAACACACCAAGTAGTCCTAATAGTCATATTACTTCTGATATAGTGCAGTCTGAGTCTCACCCTGTAACTTCTAGTGCAGCATATGACAGTATAGATAGTCATAACGACAATAACAGTGATAAAAAATTTGTCACAGACAAGGAATATAAAATGGATCAGGATGGTTATCTGGATTTGAATCTTGATGTTTTCTCTGGTGAAAATGAAAATCATGTGCTGGATATTGCGGATAACCATCACAGCGAAGGTGTTTCAGAAGAGGAAAAAGTATGCTGTTCAGAAGCCAAAAAGGAAGAAGACAGCATGGAACTTGGTGGTGAGGGTAACTTATCAAACTCGACTTCTGTTCTAAACACAGATTTTTCGTCAAGTTCAATGGGCAATCACAATTATTGTACATTTGATGGTGGAAAATTTGAGCTGGATCTGCAAACAAATTCTAGGAAGCTTCACAACAATCTATCCAAAACAGGAGCCATAGACACCACAGATACTCAAATGGATTTGACAGACGAAAGCTGCTTGGTGCGGATGTTTGGTACTTCTGTCGAGCCTGTAAGTTTGGGATCTGTTGTTCATGGAAAGCTGTGGTGCAGTAAGCGTGCGATATATCCAAAGGGCTTCAAGAGTAGAGTTCTCTTCTTTAGCATTCTTGATCCAACGATAATCTGTAGCTATATTTCTGAAGTCATTGATGCTGGATTTCTTGGACCCCTTTTCAAGGTTACTATGGAAGAATGTCCAAATGAGGCTTTCACAGATACCTCATCAGATAATTGCTGGGAATCAGTTCTGAAGAGATTACATCATGAAATCAAGAGGCGTAGGAGTCTAGGTGAACTAGAACTTCCTAACTTAAAGCTCCTGAGAAGCATTAATGGTCATAGAATGTTTGGCTTCCTTTTACCATCTATTATTCAGGCCATCGAAGTTCAAGATCCCTGTCATATGTGTGTAGAGTACTGGAATCACAAAGTTGCTCCTTCAGGCAGTGTTGTTGATAACTTGACCTACGGTTCCAGAAGCCCTTTTGGTGATATCAATACCAAAATTTTTGGTATCAATTTGATTAAGCGTAACTTTTTTGAAGAGATGAAACAAATACTACAAAGGGCAAGTCCTGATGAGTTAAGCACACTGCATAAGTTACTCAGCTCTGATGCATGGTACTGTGAGTGGAAAGTGACATTGATGGCACTGATGGATGAGATCCGGAAAGCTTGTCAATGA 3138 0.4105 MEQLKLATNSDAKEDNPLGNKPKNSNALESSDSLRNRKISARWDPVGACRPIIEEAPVFYPTIEEFEDTLSYIAKIRPLAEHHGICRIVPPACWAPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMKKKCRGRKRKRRRLSRTGTCRRKPANAASHAKNASDSEEKFGFQSGSDFTLKDFQQYADYFKECYFGLKDADRDRTVGNSNHQKRWEPSEEEIEGEYWRIVEQPSDEVEVYYGADLETGALGSGFPKASSITTSDSAQYALSGWNLNNFARLPGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAPALENAMRKHLPDLFEEQPHLLNELVTQFSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPIDWLMHGQNAVEIYSSQCRKTSLSHDKLLFGSALEGVRAITEIALGKESPKNLKWSSVCGKDGDLTKAVKARIKMEDERLDCLPTHLKLLKMNNDFDLYTERECFSCFYDLHLSAVGCECSPDRYSCLKHANLFCSCAMEKRFVLLRYTRNELTKLLEALEGESHEIKVWANKNCGKVSANANEVCIDKSDVEKDIYKTKNCEEIDSLTGCEGTKDRSNLNTPSSPNSHITSDIVQSESHPVTSSAAYDSIDSHNDNNSDKKFVTDKEYKMDQDGYLDLNLDVFSGENENHVLDIADNHHSEGVSEEEKVCCSEAKKEEDSMELGGEGNLSNSTSVLNTDFSSSSMGNHNYCTFDGGKFELDLQTNSRKLHNNLSKTGAIDTTDTQMDLTDESCLVRMFGTSVEPVSLGSVVHGKLWCSKRAIYPKGFKSRVLFFSILDPTIICSYISEVIDAGFLGPLFKVTMEECPNEAFTDTSSDNCWESVLKRLHHEIKRRRSLGELELPNLKLLRSINGHRMFGFLLPSIIQAIEVQDPCHMCVEYWNHKVAPSGSVVDNLTYGSRSPFGDINTKIFGINLIKRNFFEEMKQILQRASPDELSTLHKLLSSDAWYCEWKVTLMALMDEIRKACQ 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8604g00002 1045 Gene3D - 815 955 - -
Vium8604g00002 1045 ProSiteProfiles FYR domain FYRN motif profile. 811 869 IPR003888 GO:0005634
Vium8604g00002 1045 SUPERFAMILY Clavaminate synthase-like 229 446 - -
Vium8604g00002 1045 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Vium8604g00002 1045 SMART fyrn_3 825 869 IPR003888 GO:0005634
Vium8604g00002 1045 Gene3D Cupin 41 415 - -
Vium8604g00002 1045 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Vium8604g00002 1045 Pfam F/Y rich C-terminus 873 961 IPR003889 GO:0005634
Vium8604g00002 1045 MobiDBLite consensus disorder prediction 629 676 - -
Vium8604g00002 1045 Pfam jmjN domain 57 90 IPR003349 -
Vium8604g00002 1045 ProSiteProfiles FYR domain FYRC motif profile. 871 961 IPR003889 GO:0005634
Vium8604g00002 1045 MobiDBLite consensus disorder prediction 128 146 - -
Vium8604g00002 1045 SMART JmjN_1 55 96 IPR003349 -
Vium8604g00002 1045 MobiDBLite consensus disorder prediction 13 33 - -
Vium8604g00002 1045 ProSiteProfiles JmjC domain profile. 268 431 IPR003347 -
Vium8604g00002 1045 SMART fyrc_3 875 967 IPR003889 GO:0005634
Vium8604g00002 1045 MobiDBLite consensus disorder prediction 629 669 - -
Vium8604g00002 1045 Pfam F/Y-rich N-terminus 822 866 IPR003888 GO:0005634
Vium8604g00002 1045 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 751 - -
Vium8604g00002 1045 MobiDBLite consensus disorder prediction 1 33 - -
Vium8604g00002 1045 SMART cupin_9 268 431 IPR003347 -
Vium8604g00002 1045 MobiDBLite consensus disorder prediction 128 167 - -
Vium8604g00002 1045 FunFam Putative lysine-specific demethylase JMJ16 817 955 - -
Vium8604g00002 1045 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8604g00002 Vium-Chr8604 7087 15761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8604g00002 815 993 JUMONJI Transcription Factor Family AT1G30810 49.721 2.25e-48 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium8604g00002 JmjC 7.8e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8604g00002 K11446 - gmx:100801775 1769.98