Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium85g00004 | ATGCAGTTCCAAGTATCATCAAACAGTGATACTCAAAGCACCACTTTCCAGTTATCTAAGTTATTCAACTATCACAGTATTTTAACCATGGATACTTGCAAGAAGTCACCCCTGAAGCCATGGAAGAAAGGGCCAACTAGGGGGAAAGGTGGTCCACAAAATGCCTCTTGCGAGTACCGAGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTTCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCACCTGCAGCCCAGGTCCACTTCACCTATTACACCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCGATGTTCCCTTCCTGTGGATTACTCAATGTAAGTGCTCAACCCAGTGTTCATTTTATCCATCAGAGGCTACAAGAGCTAAAGCAAAATTCAGTTGAAAGGCAATCCCCAAATAGTTCGTCCAATGATCCAGAGGCAGAAATTCAGAATGTAGTAGACAATGCAGAAAGTCCTCTAAAAGACTCTCAAACATCATCAGAGGAGGTTCCAGGAGATATTCAAGAGAAACCCCAGATAGACCTACATGAGTTTCTTCAACAGCTGGGAATACTTAAAGATGAAAAACAGTCAGCTGATAGCACAGAAAGTTCAACAGTTCCGGAAGCTGTGTTCAGATATGAAAATGACGAATTGGGAGTGTTTTCTGACACGAGTGTTAACTGGGAGGCTTTGATTGAGATGCATGGAATTGCTGGTATTCAGGAATTAGAATCCACCCAGCTTGAAGCATATGGCCCAAATGATGACCTTACTTTTTCAACTTCCATTTGGAACTTCTAA | 918 | 0.4325 | MQFQVSSNSDTQSTTFQLSKLFNYHSILTMDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFSTAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTSPITPGKFKWFPSKNFISMFPSCGLLNVSAQPSVHFIHQRLQELKQNSVERQSPNSSSNDPEAEIQNVVDNAESPLKDSQTSSEEVPGDIQEKPQIDLHEFLQQLGILKDEKQSADSTESSTVPEAVFRYENDELGVFSDTSVNWEALIEMHGIAGIQELESTQLEAYGPNDDLTFSTSIWNF | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium85g00004 | 305 | PRINTS | Ethylene responsive element binding protein signature | 81 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
Vium85g00004 | 305 | PRINTS | Ethylene responsive element binding protein signature | 59 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Vium85g00004 | 305 | SUPERFAMILY | DNA-binding domain | 58 | 116 | IPR016177 | GO:0003677 | |
Vium85g00004 | 305 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 9 | 260 | - | - | |
Vium85g00004 | 305 | CDD | AP2 | 57 | 117 | IPR001471 | GO:0003700|GO:0006355 | |
Vium85g00004 | 305 | Pfam | AP2 domain | 57 | 107 | IPR001471 | GO:0003700|GO:0006355 | |
Vium85g00004 | 305 | MobiDBLite | consensus disorder prediction | 195 | 215 | - | - | |
Vium85g00004 | 305 | Gene3D | AP2/ERF domain | 58 | 116 | IPR036955 | GO:0003700|GO:0006355 | |
Vium85g00004 | 305 | ProSiteProfiles | AP2/ERF domain profile. | 58 | 115 | IPR001471 | GO:0003700|GO:0006355 | |
Vium85g00004 | 305 | FunFam | Ethylene-responsive transcription factor 2 | 57 | 116 | - | - | |
Vium85g00004 | 305 | SMART | rav1_2 | 58 | 121 | IPR001471 | GO:0003700|GO:0006355 | |
Vium85g00004 | 305 | MobiDBLite | consensus disorder prediction | 195 | 210 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium85g00004 | Vium-Chr85 | 30170 | 31856 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium85g00004 | 34 | 305 | AP2-EREBP Transcription Factor Family | AT3G57600 | 54.643 | 1.03e-87 | 262 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Vium85g00004 | AP2 | 3.4e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium85g00004 | - | - | var:108328773 | 601.668 |