Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium85g00004 ATGCAGTTCCAAGTATCATCAAACAGTGATACTCAAAGCACCACTTTCCAGTTATCTAAGTTATTCAACTATCACAGTATTTTAACCATGGATACTTGCAAGAAGTCACCCCTGAAGCCATGGAAGAAAGGGCCAACTAGGGGGAAAGGTGGTCCACAAAATGCCTCTTGCGAGTACCGAGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTTCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCACCTGCAGCCCAGGTCCACTTCACCTATTACACCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCGATGTTCCCTTCCTGTGGATTACTCAATGTAAGTGCTCAACCCAGTGTTCATTTTATCCATCAGAGGCTACAAGAGCTAAAGCAAAATTCAGTTGAAAGGCAATCCCCAAATAGTTCGTCCAATGATCCAGAGGCAGAAATTCAGAATGTAGTAGACAATGCAGAAAGTCCTCTAAAAGACTCTCAAACATCATCAGAGGAGGTTCCAGGAGATATTCAAGAGAAACCCCAGATAGACCTACATGAGTTTCTTCAACAGCTGGGAATACTTAAAGATGAAAAACAGTCAGCTGATAGCACAGAAAGTTCAACAGTTCCGGAAGCTGTGTTCAGATATGAAAATGACGAATTGGGAGTGTTTTCTGACACGAGTGTTAACTGGGAGGCTTTGATTGAGATGCATGGAATTGCTGGTATTCAGGAATTAGAATCCACCCAGCTTGAAGCATATGGCCCAAATGATGACCTTACTTTTTCAACTTCCATTTGGAACTTCTAA 918 0.4325 MQFQVSSNSDTQSTTFQLSKLFNYHSILTMDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFSTAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTSPITPGKFKWFPSKNFISMFPSCGLLNVSAQPSVHFIHQRLQELKQNSVERQSPNSSSNDPEAEIQNVVDNAESPLKDSQTSSEEVPGDIQEKPQIDLHEFLQQLGILKDEKQSADSTESSTVPEAVFRYENDELGVFSDTSVNWEALIEMHGIAGIQELESTQLEAYGPNDDLTFSTSIWNF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium85g00004 305 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Vium85g00004 305 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Vium85g00004 305 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Vium85g00004 305 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 260 - -
Vium85g00004 305 CDD AP2 57 117 IPR001471 GO:0003700|GO:0006355
Vium85g00004 305 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Vium85g00004 305 MobiDBLite consensus disorder prediction 195 215 - -
Vium85g00004 305 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Vium85g00004 305 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Vium85g00004 305 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Vium85g00004 305 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Vium85g00004 305 MobiDBLite consensus disorder prediction 195 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium85g00004 Vium-Chr85 30170 31856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium85g00004 34 305 AP2-EREBP Transcription Factor Family AT3G57600 54.643 1.03e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium85g00004 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium85g00004 - - var:108328773 601.668