Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium85g00003 ATGGCAACTGCGGGGAGTAAGAAGCCTTTATCATTGCAGCAATTCATCTCTGTTACCGCTCCTCTTCTTGATTTGGAAAAGGAAGCTGAGATTTCAAGCTCAATTGCTACAGGTGCGTCCAGGAATTTGGACACCGCTCAAAAGAGGGGTTCCACAATCCTTAACTTGAAGTGCATCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACATAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTTAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTACAGATTAAAGGACTCGTCAATAACTGTTGCTTTTGATGATATACCGGAAGACGGTTTGAACAGTCCCCTAAGGCTGGAAAAAGTAGCAAATGAGGTGACATATCGCAGGATGAAAGATGCATTGATACAGTTGAGCAAAGGAGTGCACAGGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCAACCTGCAGTGTCCAAGAAGGATATATCCTTTACTCCCTATAATAGAAATCTTGATCAGTCTCAGAAAGAAGCAGTTTTGAAAGCTCTGTCGTCAAAGAATGTGTTCTTGTTGCATGGACCACCTGGAACGGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAATAAAACGTGGATCTAAGATTCTTGCTTGTGCAGCCTCAAATATTGCTGTTGACAACATTGTAGAGCGGCTCGTTCCACATAGAGTTAAGCTGGTGAGAGTGGGTCATCCTGCACGCTTATTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAACTTCTGAAAACCAAAGACAGAAATACAAGAAAGGATATACAGAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCCAAGAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACTCTCTTTGAACGACTTGCAGAAACGTATGGAGATGAAATCACATCAATGCTTACTGTGCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATGCAAGTGTTAGTGCACATATGTTATATGATCTTGACAGTGTGAAGCGGACATCTTCAACTGAACCAACCCTTCTTCTTGTAGACACAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTGAAGTTACTGTGGCTCATGCGAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATAGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAAAAACAAGGAGGACCGGTTGAAGGATGTTGAAATCTCAACAGTTGATGGTTTCCAAGGAAGGGAGAAGGAAGCCATTATCATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTTGGCTTTCTAAGTGATCGGCGGCGAATGAATGTAGCCGTGACACGGTCTAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAGTGGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCACGGTGAATATCTGAGTGCATCTGAGTACCAGAATGAGTAG 1935 0.4243 MATAGSKKPLSLQQFISVTAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCIDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHRGPASDLIPVLFGERQPAVSKKDISFTPYNRNLDQSQKEAVLKALSSKNVFLLHGPPGTGKTTTVVEIILQEIKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAETYGDEITSMLTVQYRMHELIMDWSSKELYNSKIKAHASVSAHMLYDLDSVKRTSSTEPTLLLVDTAGCDMEEKKDEEDSTFNEGEAEVTVAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYLSASEYQNE 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium85g00003 644 CDD DEXXQc_SMUBP2 193 441 - -
Vium85g00003 644 Pfam AAA domain 417 613 IPR041679 -
Vium85g00003 644 FunFam P-loop containing nucleoside triphosphate hydrolase 440 644 - -
Vium85g00003 644 SMART AAA_5 208 460 IPR003593 GO:0016887
Vium85g00003 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 630 IPR027417 -
Vium85g00003 644 Gene3D - 20 424 IPR027417 -
Vium85g00003 644 Coils Coil 295 315 - -
Vium85g00003 644 CDD SF1_C_Upf1 442 630 IPR047187 -
Vium85g00003 644 FunFam DNA-binding protein SMUBP-2 38 140 - -
Vium85g00003 644 Gene3D - 38 140 - -
Vium85g00003 644 SMART ultradead3 190 441 IPR014001 -
Vium85g00003 644 NCBIfam IGHMBP2 family helicase 341 637 IPR004483 GO:0003677|GO:0005524
Vium85g00003 644 Pfam AAA domain 194 408 IPR041677 GO:0004386
Vium85g00003 644 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 38 643 - -
Vium85g00003 644 Gene3D - 440 644 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium85g00003 Vium-Chr85 15784 28022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium85g00003 167 377 Core DNA Replication Machinery Family AT1G08840 27.014 1.27e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium85g00003 - K19036 gsj:114399949 1186.79