Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium859g00007 ATGGGAGGCTGTTGCAGCCACGAAGTTTCGGTTCGAGGGAAGGTGGAAAGCGAGATAGATGATAGAGAATATGAGTGTGATCATGAAAATCATGAGTCTTATGAACGTGGTGGAGCATTGGTGAGACTAATAGGATCTTCCAAGTTTGTTTCAATGCACACCCAACAGGGCCAGAAAGGTGTGAACCAAGATGCAATGACAGTTTGGGAGGACTTCGCAGGAGAAAAGGATGTGATTTTTTGTGGTGTGTTCGATGGCCATGGTCCTCTAGGCCACAAGGTTTCACAATTTATTCGTGACAATCTGCCCTCAAAACTGTCTGCAGCAATCGAAATTTCACAACAGAAGACAATAAAGTTTTATGATGCCACTGATGCAGAAACTGCTAGTTTTGAAGATGGCTACGATGACGGTAACCAGATGTCCCTTGCTTCATGGGAGGGATGCTTTCTGAAATCCTTTGATGAGATGGATGAGCACCTTGCTCGGGAAATTAACACTGACAGCTATTGCAGTGGTTGCACTGCTGTGACTTTAATTAAACAGGGCGACCAGCTGATAGTTGGCAATTTGGGTGATTCTCGTGCAGTTCTTTGCACAAGGGACAGGGACCAACTCGTTGCTGTTCAACTCACTGTTGACTTGAAACCAGAAATTCCAAGTGAAACCTCTAGAATCGTTAACTGTGAAGGAAGAGTGTTTGCAGCAGAAGAAGAACCAGATGTGTACAGAATATGGATGCCTGATGATGACTGCCCTGGACTGGCCATGTCAAGAGCCTTTGGGGACTTTTGCCTCAAAGATTATGGCCTCATATCAGTTCCTGATGTATTTTACAGAAAAATTACCCCACAAGATCAATTTGTGGTTTTGGCAACTGATGGGATATGGGATGTGCTCACTAACCATGAAGTAATAAGCATAGTTGCTTCAGCACCAAGGAGGTCCATCGCAGCCAAGTTGTTAGTGAAGCGTGCTGTAAAAGCTTGGAGATACAAATATCCTGGTTCCAAGGTTGATGATTGTGCTGCCATATGTTTGTTTCTGAATGAACAACCTGTTCAATCCAACTCACAATCCCATATGAGTAGACAAAATAGAAAGAGCAGCAAGAACTTGCATCACTCTAAAACCACTAGAAATGAAGACACTGAAACAGTGGATGGCAAGGTTGGGTTGGAAATAGATGAAGAATGGAAAGCTCTTGGAGGGTATTCGAGAGCAAACTCTTTGTCAAAACTTCCACGCCTTGCCAGGGGTATGAGTAAACGGCAATCGTCCAAGTACTATTCACCGCGTTGA 1302 0.4401 MGGCCSHEVSVRGKVESEIDDREYECDHENHESYERGGALVRLIGSSKFVSMHTQQGQKGVNQDAMTVWEDFAGEKDVIFCGVFDGHGPLGHKVSQFIRDNLPSKLSAAIEISQQKTIKFYDATDAETASFEDGYDDGNQMSLASWEGCFLKSFDEMDEHLAREINTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAVLCTRDRDQLVAVQLTVDLKPEIPSETSRIVNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLISVPDVFYRKITPQDQFVVLATDGIWDVLTNHEVISIVASAPRRSIAAKLLVKRAVKAWRYKYPGSKVDDCAAICLFLNEQPVQSNSQSHMSRQNRKSSKNLHHSKTTRNEDTETVDGKVGLEIDEEWKALGGYSRANSLSKLPRLARGMSKRQSSKYYSPR 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium859g00007 433 ProSiteProfiles PPM-type phosphatase domain profile. 49 349 IPR001932 -
Vium859g00007 433 MobiDBLite consensus disorder prediction 375 389 - -
Vium859g00007 433 PANTHER PROTEIN PHOSPHATASE 38 347 IPR015655 GO:0004722|GO:0006470
Vium859g00007 433 Pfam Protein phosphatase 2C 54 325 IPR001932 -
Vium859g00007 433 SMART PP2C_4 35 347 IPR001932 -
Vium859g00007 433 CDD PP2Cc 49 349 IPR001932 -
Vium859g00007 433 MobiDBLite consensus disorder prediction 357 389 - -
Vium859g00007 433 MobiDBLite consensus disorder prediction 413 433 - -
Vium859g00007 433 Gene3D - 45 352 IPR036457 -
Vium859g00007 433 SUPERFAMILY PP2C-like 45 351 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium859g00007 Vium-Chr859 141366 144586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium859g00007 1 353 PP2C-type Phosphatase Gene Family AT5G01700 53.824 1.01e-133 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium859g00007 - - vun:114185420 843.188