Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8597g00007 ATGGCTCTGGACCAGCCTTCCAACCCCAACGCCGTTGACGGGGCGGGTAACGGCGCCGCGCCGTGCTCCGCCGCGGACGGAGGCGACGACGGAAGGCCGGCGGCGAGGCTGCCGCGGTGGACGCGGCAGGAGATTCTGGTGCTGATTCAGGGGAAGAGTGACGCGGAGAACCGGTTCAGACCGGGTCGGGGGAGCGGTTCGGCGTTCGGTTTGAGCGAACCGAAATGGGCGCTGGTCTCGGCGTACTGCAAAAAGCACGGCGTGAACCGGGAGCCGGTGCAGTGCCGGAAGCGGTGGAGCAACCTCGCCGGCGATTACAAGAAGATCAAGGAGTGGGAGTCGCAGGTCAGGGACGAAGGGGAGTCGTTTTGGCTCATGAGGAATGATTTGAGGAGGGAGAGGAAATTGCCCGGTTATTTTGACAGGGAAGTGTATAATATTCTCGATTCTCCGTCCACGGCGGCTGCTGCGACTGTGGAGACTCCTACGGCCGCGGTGGAGGAGGAAGTGCACCTGTATGATAGTAATCGGAGAGTTGGGAGTGATGATGGGTTGTTCTCTGATTGTGAGAAGGAGGAGGTTTTTCTCGCCCCTGCCAAGGATGTTCCTGCACCCGTTCCAATCTCAGAGAAGCAGTTTCAACCACTCCTTCAACTATGTGAACGGGAAGGCAATGCTGAAGGTACTACCAATGAGAAACGGGCAACCCCAAATCCAGAAATGGGTTCTACATCTCAAGGAGGACGGAAGAGGAAGCGATTTTCAACCGATGCAGAAGAGGAAAGTTTGCAAAGTCAATTAATTGATGTCTTAGAAAAGAATGGCAAAATGCTTCGTGATCATCTTGAAGCTCAGAACACCAATTTCCAATTGGACCGCCAGCAGCAGAAAGACACTGCAACTAACATAGTTGCCGTACTTGATAAGCTGGCAGATGCTCTAGGGAGAATTGCTGATAAATTGTAG 966 0.5466 MALDQPSNPNAVDGAGNGAAPCSAADGGDDGRPAARLPRWTRQEILVLIQGKSDAENRFRPGRGSGSAFGLSEPKWALVSAYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDEGESFWLMRNDLRRERKLPGYFDREVYNILDSPSTAAAATVETPTAAVEEEVHLYDSNRRVGSDDGLFSDCEKEEVFLAPAKDVPAPVPISEKQFQPLLQLCEREGNAEGTTNEKRATPNPEMGSTSQGGRKRKRFSTDAEEESLQSQLIDVLEKNGKMLRDHLEAQNTNFQLDRQQQKDTATNIVAVLDKLADALGRIADKL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8597g00007 321 Gene3D - 40 108 - -
Vium8597g00007 321 ProSiteProfiles Myb-like domain profile. 32 103 IPR001005 -
Vium8597g00007 321 MobiDBLite consensus disorder prediction 230 245 - -
Vium8597g00007 321 Pfam Myb/SANT-like DNA-binding domain 39 119 IPR044822 -
Vium8597g00007 321 CDD GT1 38 110 - -
Vium8597g00007 321 MobiDBLite consensus disorder prediction 1 38 - -
Vium8597g00007 321 MobiDBLite consensus disorder prediction 224 260 - -
Vium8597g00007 321 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 6 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8597g00007 Vium-Chr8597 31895 39751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8597g00007 39 111 Trihelix Transcription Factor Family AT1G33240 34.247 1.00e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium8597g00007 Myb_DNA-bind_4 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8597g00007 - - gmx:100788594 554.673