Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8597g00005 ATGCAATTTGCCAAGCTCGATGACTCTCCTATGTTCCGCAAACAGATACAATGCATGGAGGAAAGTGCTGAATCTTTAAGAGAGAGAAGTTTAAAATTTTACAAAGGATGTAGAAAATACACTGAAGGTCTCGGGGAGGCATATGATGGAGACATTGCATTTGCCAGTGCCCTAGAAACTTTTGGTGGTGGACATAATGACCCAATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCCCTAAGAGAAATTGGGACATACAAGGAAGTCCTTCGGTCACAGGTTGAGCATATGCTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTGCAAGAGGTCAAGGAAGCACGGAAACGCTTTGACAAGGCTAGTCTTATCTATGACCAGACTCGGGAGAGGTTTCTGTCACTAAGAAAAGGCACAAAAACTGATGTAGCTACTGCTCTGGAAGAGGAGCTTCATAGTGCAAGATCAACATTTGAGCAAGCTCGATTTAATCTGGTTACTGCGTTGTCAACTGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTACGAGTTGTTGCACCAAATGGAGCCGTATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAGGCAGCCCTGAATGAAAGAATGCAAGAATACAAGCGACAGATTGATCGGGAGAGTAGGTGGGCCTCAAATGGTTCTAATGGGTCCCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCTGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACAATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGTGACTGGAAGAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTATCGTAAGCAGTGCAGCAAATCATCTGTAAGAAGTGGGTCGAGTAGTCAACATTCTGGCCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCGTCTCATCACCATGGTGGGGTACATGATGAAAAATCTGTTGCTCACCACACTGTGAACCTGCTTACGTCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCCTCATTACTGAGTTCTCAGATCCCTGAAAGGATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTTGAAGAATGTGCAGCAGATAGAAGTCTTGCATCTGCACATCTGGAGCGCCCCTCAAGAAGTTTGCAACAGCAGCGATCCTGCACTAAAATTGAGAAGCCGATTGATGTGCTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGTGCTCCTGAACCCGATTGGGCATCACTAAATCTTGGTGTTCTTGTATGCATTGAGTGTTCTGGTGTGCATCGCAACCTTGGTGTGCATATATCAAAGGTCAGGTCTCTTACTTTGGATGTTAAAGTGTGGGAGCCTTCTGTCATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCCGTCTGGGAGGAATTATTACAATCAAGAAGTGCCATTCAGGTTGATCTTGTCCCTACAGGCTTAAGCAAGTCTGATAAGCCACTGATGTTCTTCTTTCCCAAGCCTTGTCAATCTGATTCTCTGTCAGTGAAGGAGAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCGCAGGCCAAAGGACAACCGACTTTCGGTGGCACAACAAATCTGGGAGGCTGTTCATGCTAATGACAAAAAAGCTGTATATCGATACATTGTTAATTCTGACGTTGATGTTAATGTTGCTTATGAGCAAATGTGCAACAGTTCCCTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAGACTAGCCATGATCACAGCTCTACTTTGGCCGGCAACACATTGGACTGGTCCTCAAGTAAAGAAGGCCCGGTCATGGACAATCTAGATGGGTGCACCCTACTTCACCTTGCATGTGAAACTGCAGATATTGGCATGGTGGAGCTCCTCCTACAGTATGGTGCAAATGTTAATGCAACTGATTCAAGAGGTCAAACGCCACTGCATCGTTGTATTCTCAAAGGCAGATCTGCATTTGCAAGATTAATGCTTTCAAGGGGAGCGGATCCGCGAGCTGTGGATGAGCAGGGAAGAACCCCGATTGAACTTGCTGCTGAGTCAAATGCTGGTGAAAGAGAAGTCCATGCTCCATTAAATGACTCTAATGGATGA 2472 0.4397 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKTDVATALEEELHSARSTFEQARFNLVTALSTVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSVRSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERMLPASPMGSGHHRSTSESSSFESSDFDHSAVEECAADRSLASAHLERPSRSLQQQRSCTKIEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAIQVDLVPTGLSKSDKPLMFFFPKPCQSDSLSVKEKFIHAKYAEKLFVRRPKDNRLSVAQQIWEAVHANDKKAVYRYIVNSDVDVNVAYEQMCNSSLTLAKVMLLQEQTSHDHSSTLAGNTLDWSSSKEGPVMDNLDGCTLLHLACETADIGMVELLLQYGANVNATDSRGQTPLHRCILKGRSAFARLMLSRGADPRAVDEQGRTPIELAAESNAGEREVHAPLNDSNG 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8597g00005 823 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vium8597g00005 823 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Vium8597g00005 823 MobiDBLite consensus disorder prediction 253 269 - -
Vium8597g00005 823 Pfam Putative GTPase activating protein for Arf 506 642 IPR001164 GO:0005096
Vium8597g00005 823 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Vium8597g00005 823 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Vium8597g00005 823 MobiDBLite consensus disorder prediction 441 464 - -
Vium8597g00005 823 ProSiteProfiles PH domain profile. 292 431 IPR001849 -
Vium8597g00005 823 Gene3D - 285 441 IPR011993 -
Vium8597g00005 823 SMART arf_gap_3 503 648 IPR001164 GO:0005096
Vium8597g00005 823 CDD BAR_SFC_plant 14 215 IPR035670 -
Vium8597g00005 823 ProSiteProfiles Ankyrin repeat region circular profile. 730 761 - -
Vium8597g00005 823 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 485 649 - -
Vium8597g00005 823 SUPERFAMILY ArfGap/RecO-like zinc finger 503 643 IPR037278 -
Vium8597g00005 823 ProSiteProfiles Ankyrin repeat profile. 763 795 IPR002110 GO:0005515
Vium8597g00005 823 SUPERFAMILY Ankyrin repeat 664 808 IPR036770 -
Vium8597g00005 823 PRINTS HIV Rev interacting protein signature 557 578 IPR001164 GO:0005096
Vium8597g00005 823 PRINTS HIV Rev interacting protein signature 515 534 IPR001164 GO:0005096
Vium8597g00005 823 PRINTS HIV Rev interacting protein signature 534 551 IPR001164 GO:0005096
Vium8597g00005 823 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Vium8597g00005 823 Pfam Ankyrin repeats (many copies) 733 783 IPR002110 GO:0005515
Vium8597g00005 823 CDD PH_ACAP 295 435 - -
Vium8597g00005 823 PANTHER CENTAURIN/ARF 3 819 IPR045258 GO:0005096
Vium8597g00005 823 Coils Coil 227 247 - -
Vium8597g00005 823 ProSiteProfiles Ankyrin repeat profile. 730 762 IPR002110 GO:0005515
Vium8597g00005 823 CDD ArfGap 506 635 - -
Vium8597g00005 823 Gene3D Arf GTPase activating protein 483 646 IPR038508 -
Vium8597g00005 823 Gene3D - 647 815 IPR036770 -
Vium8597g00005 823 ProSiteProfiles Ankyrin repeat region circular profile. 763 795 - -
Vium8597g00005 823 Pfam PH domain 294 430 IPR001849 -
Vium8597g00005 823 SUPERFAMILY PH domain-like 293 447 - -
Vium8597g00005 823 ProSiteProfiles ARF GTPase-activating proteins domain profile. 503 648 IPR001164 GO:0005096
Vium8597g00005 823 MobiDBLite consensus disorder prediction 789 823 - -
Vium8597g00005 823 SMART ANK_2a 730 759 IPR002110 GO:0005515
Vium8597g00005 823 SMART ANK_2a 763 792 IPR002110 GO:0005515
Vium8597g00005 823 MobiDBLite consensus disorder prediction 248 270 - -
Vium8597g00005 823 SMART PH_update 293 433 IPR001849 -
Vium8597g00005 823 MobiDBLite consensus disorder prediction 450 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8597g00005 Vium-Chr8597 13133 23956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8597g00005 489 654 C2H2 Transcription Factor Family AT3G07940 38.323 1.85e-20 90.5