Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8597g00004 ATGCAATTTGCCAAGCTCGATGACTCTCCTATGTTCCGCAAACAGATACAATGCATGGAGGAAAGTGCTGAATCTTTAAGAGAGAGAAGTTTAAAATTTTACAAAGGATGTAGAAAATACACTGAAGGTCTCGGGGAGGCATATGATGGAGACATTGCATTTGCCAGTGCCCTAGAAACTTTTGGTGGTGGACATAATGACCCAATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCCCTAAGAGAAATTGGGACATACAAGGAAGTCCTTCGGTCACAGGTTGAGCATATGCTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTGCAAGAGGTCAAGGAAGCACGGAAACGCTTTGACAAGGCTAGTCTTATCTATGACCAGACTCGGGAGAGGTTTCTGTCACTAAGAAAAGGCACAAAAACTGATGTAGCTACTGCTCTGGAAGAGGAGCTTCATAGTGCAAGATCAACATTTGAGCAAGCTCGATTTAATCTGGTTACTGCGTTGTCAACTGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTACGAGTTGTTGCACCAAATGGAGCCGTATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAGGCAGCCCTGAATGAAAGAATGCAAGAATACAAGCGACAGATTGATCGGGAGAGTAGGTGGGCCTCAAATGGTTCTAATGGGTCCCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCTGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACAATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGTGACTGGAAGAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTATCGTAAGCAGTGCAGCAAATCATCTGGGTCGAGTAGTCAACATTCTGGCCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCGTCTCATCACCATGGTGGGGTACATGATGAAAAATCTGTTGCTCACCACACTGTGAACCTGCTTACGTCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCCTCATTACTGAGTTCTCAGATCCCTGAAAGGATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTTGAAGAATGTGCAGCAGATAGAAGTCTTGCATCTGCACATCTGGAGCGCCCCTCAAGAAGTTTGCAACAGCAGCGATCCTGCACTAAAATTGAGAAGCCGATTGATGTGCTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGTGCTCCTGAACCCGATTGGGCATCACTAAATCTTGGTGTTCTTGTATGCATTGAGTGTTCTGGTGTGCATCGCAACCTTGGTGTGCATATATCAAAGGTCAGGTCTCTTACTTTGGATGTTAAAGTGTGGGAGCCTTCTGTCATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCCGTCTGGGAGGAATTATTACAATCAAGAAGTGCCATTCAGGTTGATCTTGTCCCTACAGGCTTAAGCAAGTCTGATAAGCCACTGATGTTCTTCTTTCCCAAGCCTTGTCAATCTGATTCTCTGTCAGTGAAGGAGAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCGCAGGCCAAAGGACAACCGACTTTCGGTGGCACAACAAATCTGGGAGGCTGTTCATGCTAATGACAAAAAAGCTGTATATCGATACATTGTTAATTCTGACGTTGATGTTAATGTTGCTTATGAGCAAATGTGCAACAGTTCCCTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAGACTAGCCATGATCACAGCTCTACTTTGGCCGGCAACACATTGGACTGGTCCTCAAGTAAAGAAGGCCCGGTCATGGACAATCTAGATGGGTGCACCCTACTTCACCTTGCATGTGAAACTGCAGATATTGGCATGGTGGAGCTCCTCCTACAGTATGGTGCAAATGTTAATGCAACTGATTCAAGAGGTCAAACGCCACTGCATCGTTGTATTCTCAAAGGCAGATCTGCATTTGCAAGATTAATGCTTTCAAGGGGAGCGGATCCGCGAGCTGTGGATGAGCAGGGAAGAACCCCGATTGAACTTGCTGCTGAGTCAAATGCTGGTGAAAGAGAAGTCCATGCTCCATTAAATGACTCTAATGGATGA 2463 0.4401 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKTDVATALEEELHSARSTFEQARFNLVTALSTVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERMLPASPMGSGHHRSTSESSSFESSDFDHSAVEECAADRSLASAHLERPSRSLQQQRSCTKIEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAIQVDLVPTGLSKSDKPLMFFFPKPCQSDSLSVKEKFIHAKYAEKLFVRRPKDNRLSVAQQIWEAVHANDKKAVYRYIVNSDVDVNVAYEQMCNSSLTLAKVMLLQEQTSHDHSSTLAGNTLDWSSSKEGPVMDNLDGCTLLHLACETADIGMVELLLQYGANVNATDSRGQTPLHRCILKGRSAFARLMLSRGADPRAVDEQGRTPIELAAESNAGEREVHAPLNDSNG 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8597g00004 820 ProSiteProfiles Ankyrin repeat profile. 760 792 IPR002110 GO:0005515
Vium8597g00004 820 MobiDBLite consensus disorder prediction 786 820 - -
Vium8597g00004 820 ProSiteProfiles Ankyrin repeat region circular profile. 727 758 - -
Vium8597g00004 820 MobiDBLite consensus disorder prediction 438 461 - -
Vium8597g00004 820 Gene3D - 644 812 IPR036770 -
Vium8597g00004 820 CDD ArfGap 503 632 - -
Vium8597g00004 820 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Vium8597g00004 820 MobiDBLite consensus disorder prediction 253 269 - -
Vium8597g00004 820 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Vium8597g00004 820 Pfam Ankyrin repeats (many copies) 730 780 IPR002110 GO:0005515
Vium8597g00004 820 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Vium8597g00004 820 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Vium8597g00004 820 SMART arf_gap_3 500 645 IPR001164 GO:0005096
Vium8597g00004 820 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vium8597g00004 820 SUPERFAMILY Ankyrin repeat 661 805 IPR036770 -
Vium8597g00004 820 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Vium8597g00004 820 CDD BAR_SFC_plant 14 215 IPR035670 -
Vium8597g00004 820 Pfam PH domain 294 427 IPR001849 -
Vium8597g00004 820 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Vium8597g00004 820 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Vium8597g00004 820 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Vium8597g00004 820 MobiDBLite consensus disorder prediction 447 461 - -
Vium8597g00004 820 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 646 - -
Vium8597g00004 820 SMART ANK_2a 727 756 IPR002110 GO:0005515
Vium8597g00004 820 SMART ANK_2a 760 789 IPR002110 GO:0005515
Vium8597g00004 820 Gene3D Arf GTPase activating protein 480 643 IPR038508 -
Vium8597g00004 820 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 645 IPR001164 GO:0005096
Vium8597g00004 820 MobiDBLite consensus disorder prediction 249 270 - -
Vium8597g00004 820 Pfam Putative GTPase activating protein for Arf 503 639 IPR001164 GO:0005096
Vium8597g00004 820 Coils Coil 227 247 - -
Vium8597g00004 820 ProSiteProfiles Ankyrin repeat region circular profile. 760 792 - -
Vium8597g00004 820 SUPERFAMILY ArfGap/RecO-like zinc finger 500 640 IPR037278 -
Vium8597g00004 820 SUPERFAMILY PH domain-like 293 444 - -
Vium8597g00004 820 CDD PH_ACAP 295 432 - -
Vium8597g00004 820 PANTHER CENTAURIN/ARF 3 816 IPR045258 GO:0005096
Vium8597g00004 820 Gene3D - 285 438 IPR011993 -
Vium8597g00004 820 SMART PH_update 293 430 IPR001849 -
Vium8597g00004 820 ProSiteProfiles Ankyrin repeat profile. 727 759 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8597g00004 Vium-Chr8597 13133 23956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8597g00004 486 651 C2H2 Transcription Factor Family AT3G07940 38.323 1.95e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8597g00004 K12489 - gmx:100789134 1503.03