Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8597g00003 ATGTTTAGGAAAAGGCACATCGCTGCTTCTCTTGCCAGGGAATTGTTGGCACTCCAGCCACTTTTTATTATCTTCTTGTTCAGCTTGCACCACAACACTGTGCAATGTCAAGGAAGGTTGAGTAAACATGTTTCTTCATCATCAGGATACAAGGATGACCCCAAGAAGATAATTTTGAGCTTGGTTTTAGGAGCAGTAACTGGACTAGTTTGTTCTGTTTTCTTTGCACTTGTGGTACGCTGTGTGGTGCAGTACCTAAACCGCACACCAATCCTCAAGGGGCCTGTTATTTTCTCCCCCAAAATTGCCCCCAAGACACTCCAATTAGCTTTGGCGAAGGAAAACCACTTGCTTGGTTCGAGTCCTAATGGGAAATACTACAAAACTGTGCTTGACAATGGACTCACTATTGCAGTGAAAAGGCTAACACCCTTTGGAAGCAGCTCCCCAGAGGCTAAGAAAAAATCAGTGAAGAGGCAGATACAAACTGAGCTAGAGCTTCTTGCAAGCTTAAGACACAGGAACTTGATGAGTTTGAGAGCCTATGTACGTGAGCCTGATGGTTTCTCATTGGTTTATGATTATGTGTCCACTGGGAGTCTTGCTGATGTGTTGAATAGAGTTTGGGAGAATGAATTGGCCTTTGGTTGGGAAGTTAGGCTCAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACCTGTGCGCCTCAGATACTGCTGCACTACAACTTGAAGCCAACAAATGTGATGCTGGATGGTGATTTTGAACCCAGATTAGCGGACTATGGTTTGGCCAAACTTCTACCCAACTTGGATAGAGGAACTTCTCTCTACACTCCTCCTGAATGTTTCCTCAACTGCAGCAGGTACACTGACAAAAGTGACATCTTCAGTTTTGGCATGATACTAGGTGTTTTGTTAACTGGTAAGGACCCTACAGATCCATTCTTTGGAGAAGCAGCGAGTGGTGGAAGTTTGGGAGGTTGGTTGAGGCACTTGCAGCAAGCCGGTGATGCGAGGGATGCCCTTGATAAGAGCATGTTAGGGGAAGAAGGAGAGGAAGATGAGATGCTAATGGCTGTTAGGATTGCTGCTGCATGCCTCTCTGATATGCCTGCAGATAGGCCTTCTAGTGATGAGCTTGTTCACATGCTAACGCAACTGCACAGTTTTTGA 1188 0.4554 MFRKRHIAASLARELLALQPLFIIFLFSLHHNTVQCQGRLSKHVSSSSGYKDDPKKIILSLVLGAVTGLVCSVFFALVVRCVVQYLNRTPILKGPVIFSPKIAPKTLQLALAKENHLLGSSPNGKYYKTVLDNGLTIAVKRLTPFGSSSPEAKKKSVKRQIQTELELLASLRHRNLMSLRAYVREPDGFSLVYDYVSTGSLADVLNRVWENELAFGWEVRLRIAVGVVKGLQYLHFTCAPQILLHYNLKPTNVMLDGDFEPRLADYGLAKLLPNLDRGTSLYTPPECFLNCSRYTDKSDIFSFGMILGVLLTGKDPTDPFFGEAASGGSLGGWLRHLQQAGDARDALDKSMLGEEGEEDEMLMAVRIAAACLSDMPADRPSSDELVHMLTQLHSF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8597g00003 395 Gene3D Transferase(Phosphotransferase) domain 1 196 394 - -
Vium8597g00003 395 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 196 394 - -
Vium8597g00003 395 CDD STKc_IRAK 118 392 - -
Vium8597g00003 395 ProSiteProfiles Protein kinase domain profile. 112 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8597g00003 395 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 35 391 - -
Vium8597g00003 395 Pfam Protein kinase domain 114 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8597g00003 395 SUPERFAMILY Protein kinase-like (PK-like) 115 389 IPR011009 -
Vium8597g00003 395 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 104 195 - -
Vium8597g00003 395 Gene3D Phosphorylase Kinase; domain 1 105 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8597g00003 Vium-Chr8597 8551 11465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8597g00003 58 392 Receptor kinase-like Gene Family AT2G31880 35.294 4.11e-62 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vium8597g00003 Pkinase 1.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8597g00003 - - vra:106759565 757.673