Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8597g00002 ATGTTTAGGAAAAGGCACATCGCTGCTTCTCTTGCCAGGGAATTGTTGGCACTCCAGCCACTTTTTATTATCTTCTTGTTCAGCTTGCACCACAACACTGTGCAATGTCAAGGAAGGTTGAGTAAACATGTTTCTTCATCATCAGGATACAAGGATGACCCCAAGAAGATAATTTTGAGCTTGGTTTTAGGAGCAGTAACTGGACTAGTTTGTTCTGTTTTCTTTGCACTTGTGGTACGCTGTGTGGTGCAGTACCTAAACCGCACACCAATCCTCAAGGGGCCTGTTATTTTCTCCCCCAAAATTGCCCCCAAGACACTCCAATTAGCTTTGGCGAAGGAAAACCACTTGCTTGGTTCGAGTCCTAATGGGAAATACTACAAAACTGTGCTTGACAATGGACTCACTATTGCAGTGAAAAGGCTAACACCCTTTGGAAGCAGCTCCCCAGAGGCTAAGAAAAAATCAGTGAAGAGGCAGATACAAACTGAGCTAGAGCTTCTTGCAAGCTTAAGACACAGGAACTTGATGAGTTTGAGAGCCTATGTACGTGAGCCTGATGGTTTCTCATTGGTTTATGATTATGTGTCCACTGGGAGTCTTGCTGATGTGTTGAATAGAGTTTGGGAGAATGAATTGGCCTTTGGTTGGGAAGTTAGGCTCAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACCTGTGCGCCTCAGATACTGCTGCACTACAACTTGAAGCCAACAAATGTGATGCTGGATGGTGATTTTGAACCCAGATTAGCGGACTATGGTTTGGCCAAACTTCTACCCAACTTGGATAGAGGAACTTCTCTCTACACTCCTCCTGAATGTTTCCTCAACTGCAGGTACACTGACAAAAGTGACATCTTCAGTTTTGGCATGATACTAGGTGTTTTGTTAACTGGTAAGGACCCTACAGATCCATTCTTTGGAGAAGCAGCGAGTGGTGGAAGTTTGGGAGGTTGGTTGAGGCACTTGCAGCAAGCCGGTGATGCGAGGGATGCCCTTGATAAGAGCATGTTAGGGGAAGAAGGAGAGGAAGATGAGATGCTAATGGCTGTTAGGATTGCTGCTGCATGCCTCTCTGATATGCCTGCAGATAGGCCTTCTAGTGATGAGCTTGTTCACATGCTAACGCAACTGCACAGTTTTTGA 1185 0.4549 MFRKRHIAASLARELLALQPLFIIFLFSLHHNTVQCQGRLSKHVSSSSGYKDDPKKIILSLVLGAVTGLVCSVFFALVVRCVVQYLNRTPILKGPVIFSPKIAPKTLQLALAKENHLLGSSPNGKYYKTVLDNGLTIAVKRLTPFGSSSPEAKKKSVKRQIQTELELLASLRHRNLMSLRAYVREPDGFSLVYDYVSTGSLADVLNRVWENELAFGWEVRLRIAVGVVKGLQYLHFTCAPQILLHYNLKPTNVMLDGDFEPRLADYGLAKLLPNLDRGTSLYTPPECFLNCRYTDKSDIFSFGMILGVLLTGKDPTDPFFGEAASGGSLGGWLRHLQQAGDARDALDKSMLGEEGEEDEMLMAVRIAAACLSDMPADRPSSDELVHMLTQLHSF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8597g00002 394 Gene3D Transferase(Phosphotransferase) domain 1 196 393 - -
Vium8597g00002 394 Pfam Protein kinase domain 114 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8597g00002 394 SUPERFAMILY Protein kinase-like (PK-like) 115 388 IPR011009 -
Vium8597g00002 394 CDD STKc_IRAK 118 391 - -
Vium8597g00002 394 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 196 393 - -
Vium8597g00002 394 Gene3D Phosphorylase Kinase; domain 1 105 195 - -
Vium8597g00002 394 ProSiteProfiles Protein kinase domain profile. 112 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8597g00002 394 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 35 390 - -
Vium8597g00002 394 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 104 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8597g00002 Vium-Chr8597 8551 11545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8597g00002 58 391 Receptor kinase-like Gene Family AT2G31880 35.112 9.17e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vium8597g00002 Pkinase 1.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8597g00002 - - vra:106759565 751.51