Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8590g00008 ATGCTACACACTCGGCAGTTTTTGAATATTGGTGACTGTTCTTCACTTTCAGAGGGTTATACAGAAAAGGTTGAAAAGAAAACATTAGACAGAAGCCTGGCATGTGAGAAAAAGAATATTGTTGAAGGTGAAATGAACACAAAAATAGCATTGCATGAAGCAAAATGCATAGAAGATCAAGCATCTGAGGTTACTTGCAGAAGAGCTAAAGTATCCATAAGAGCACGATCAGATTTTTCTTTGATGGGAGATGGATGCCAATGGAGAAAGTACGGACAAAAGACTGCCAAAGGCAACCCTTGTCCCCGAGCCTACTACCGTTGCAGCATGGGAACTGCATGTCCAGTTCGTAAGCAGGTTTCTGTCCCAAAATCTTAA 378 0.4127 MLHTRQFLNIGDCSSLSEGYTEKVEKKTLDRSLACEKKNIVEGEMNTKIALHEAKCIEDQASEVTCRRAKVSIRARSDFSLMGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVSVPKS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8590g00008 125 ProSiteProfiles WRKY domain profile. 77 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium8590g00008 125 Pfam WRKY DNA -binding domain 84 123 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium8590g00008 125 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 34 120 IPR044810 GO:0003700
Vium8590g00008 125 Gene3D WRKY domain 69 124 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium8590g00008 125 SMART WRKY_cls 82 124 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium8590g00008 125 SUPERFAMILY WRKY DNA-binding domain 75 122 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8590g00008 Vium-Chr8590 36802 39482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8590g00008 54 120 WRKY Transcription Factor Family AT4G04450 68.657 8.27e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium8590g00008 WRKY 4.5e-16 CL0274