Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8581g00002 ATGACGCGCATGCTCAGAATTCTCAAATCTGCCGACAACGCCACGGCTGTTGCAGCGGCGGCTCCGCCGCCGGAGGCGGTGGCCCTGGAGTCCGATTTCGTGGTGATTCTGGCGGCTCTCCTGTGCGCTTTAATCTGCGTGGTGGGACTGGTAGCCGTGGCGCGGTGCGCGTGGCTACGGCGAGGGCCGGGTGGAGGAAACTCGCCGCGGCAAGCGGTGGTGAACAAGGGGTTGAAGAAGAAGGTGCTGCAGTCGCTGCCGAGGTTCGCGTACGTGGACAGCAACCCGAGCAAGTGGGTGGCGACGACGGAATGCGCGATTTGCCTCGGTGATTTCGCCCCCGGCGACGAGATTCGTGTTCTTCCGCAGTGCGGCCACGGCTTCCACGTGTCCTGCATCGACAGGTGGCTGGGGTCTCACTCCTCCTGCCCTTCCTGCCGCCAGGTCCTCGCCGTCGCCAGGTGTCAGAAGTGCGGCCGCTTTCCGGCCACCGCCTCAAGAAGCGGCGCCAGCGAGCCCGAATTAAAGTCCAGAGAAGACAGCAATGCTGCTTCGATAAGTAATTGCAGTAATAACAACGGTGATGGCGGTGGAAGTGGTAATCACGCGAATCATCACCATAGCCACCACTCTGACAGTGGGTTCTTGCCGTGA 654 0.6193 MTRMLRILKSADNATAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGPGGGNSPRQAVVNKGLKKKVLQSLPRFAYVDSNPSKWVATTECAICLGDFAPGDEIRVLPQCGHGFHVSCIDRWLGSHSSCPSCRQVLAVARCQKCGRFPATASRSGASEPELKSREDSNAASISNCSNNNGDGGGSGNHANHHHSHHSDSGFLP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8581g00002 217 CDD RING-H2_EL5-like 104 147 - -
Vium8581g00002 217 MobiDBLite consensus disorder prediction 180 199 - -
Vium8581g00002 217 MobiDBLite consensus disorder prediction 163 217 - -
Vium8581g00002 217 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vium8581g00002 217 SMART ring_2 105 146 IPR001841 -
Vium8581g00002 217 SUPERFAMILY RING/U-box 84 152 - -
Vium8581g00002 217 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 21 159 - -
Vium8581g00002 217 SMART FANCL_C_2 101 155 - -
Vium8581g00002 217 Pfam Ring finger domain 104 147 IPR001841 -
Vium8581g00002 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8581g00002 Vium-Chr8581 23676 24728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8581g00002 1 180 C3H Transcription Factor Family AT1G76410 56.452 3.28e-62 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8581g00002 - - vun:114170353 347.436