Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8579g00010 ATGTTGGTTAGGGTTAACACTTTGCTTCAAGGATATTCAGGCATTAGATTCGAAATTATGGAAGCTATAACTAAGTTTTTAAATCACAACATAACTCCATGTCTTCCACTACGTGGTACAATCACTGCATCAGGTGACTTGGTTCCTTTATCCTATGTTGCCGGTCTTTTAATTGGAAGATCAAACTCCAAGTCAATTGGACCCAATGGAGAAGTACTCAATGCTAAAGATGCCTTTAAATTAGCTGGAATTGATGGAGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTTGTCAATGGTACAGCAGTGGGATCTGGCTTGGCTTCCATTGTTCTTTTTGAGGCAAACTTACTTGTTGTTCTTTCTGAAGTTATGTCTGCAATCTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGACCACTTGACTCATAAATTGAAGCACCACCCTGGTCAAATCGAGGCTGCTGCTATAATGGAACACATACTAGATGGAAGCTCGTACATTAAGGAAGCCCAAAAGTTACATGAGATTGATCCACTTCAAAAGCCAAAACAAGATAGGTATGCTCTCAGAACGTCTCCTCAATGGCTTGGACCACAAATTGAAGTAATCAGACATGCGACTAAGATGATTGAAAGGGAGATAAACTCTGTTAATGATAACCCCTTGATCGATGTTTCAAGGAACAAGGCACTTCATGGGGGCAATTTCCAAGGTACTCCAATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCATCGATCGGGAAGCTCATGTTTGCCCAATTCTCTGAACTTGTGAATGACTTGTACAATAATGGTTTACCTTCAAATCTAACAGCCGGTCGCAATCCAAGCTTAGATTATGGATTCAAAGGTGCTGAAATAGCAATGGCATCGTACTGTTCAGAACTTCAGTATCTGGCCAACCCTGTGACTAATCATGTGCAGAGTGCTGAGCAACATAACCAAGATGTCAATTCCTTAGGCTTGGTTTCCTCAAGAAAGACTGCTGAAGCTGTAGAAATATTAAAGCTCATGTCTTCCACTTACTTAGTTGCATTGTGTCAAGCCATTGACTTGAGACATTTGGAAGAAAACATGAAGAACGCAGTTAAGAATGCTGTGAGTCAAGTGGCCAAAAGAGTTCTCACAACTGGGATCAATGGTGAGTTACATCCTTCTAGATTCTGTGAGAAGGACTTGCTTAAAGTTGTTGATCATGAATATGTCTTTGCTTACATTGATGACCCCTGTAGTATAACCTACCCTTTGATGCAAAAGTTGAGATCAGTTCTGGTTGATCATGCATTGCAAAACGGTGAGAAAGAGGGAAATTCAAGTAGCTCGATTTTCCATAAGATAAGAGGCTTTGAGGAAGAACTGATAGCCCTTTTGCCGAAGGAGGTAGAAAATGCAAGGATTGAAGCTGAGAATGGAAATTCAAGTATTCCTAACAGAATTAAAGAATGCAGATCTTACCCATTATATAAGTTTGTGAGAGAAAGCTTGGGTACAAGTTTGCTAACAGGGGAGAAGGTGAAGTCACCTGGTGAGGAATGTGACAAGGTTTTTACTGCATTATGTGAAGGAAAGTTTATTGATCCTATGCTCGATTGTCTAAAGAACTGGAATGGTTCTCCTCTACCAATATGCTAA 1674 0.4032 MLVRVNTLLQGYSGIRFEIMEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRSNSKSIGPNGEVLNAKDAFKLAGIDGGFFELQPKEGLALVNGTAVGSGLASIVLFEANLLVVLSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKEAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDLYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLVSSRKTAEAVEILKLMSSTYLVALCQAIDLRHLEENMKNAVKNAVSQVAKRVLTTGINGELHPSRFCEKDLLKVVDHEYVFAYIDDPCSITYPLMQKLRSVLVDHALQNGEKEGNSSSSIFHKIRGFEEELIALLPKEVENARIEAENGNSSIPNRIKECRSYPLYKFVRESLGTSLLTGEKVKSPGEECDKVFTALCEGKFIDPMLDCLKNWNGSPLPIC 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8579g00010 557 Gene3D Fumarase/aspartase (Central domain) 104 551 - -
Vium8579g00010 557 Gene3D - 370 491 IPR023144 -
Vium8579g00010 557 CDD PAL-HAL 1 367 IPR001106 -
Vium8579g00010 557 FunFam Phenylalanine ammonia-lyase 370 491 - -
Vium8579g00010 557 NCBIfam phenylalanine ammonia-lyase 1 547 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vium8579g00010 557 Pfam Aromatic amino acid lyase 1 383 IPR001106 -
Vium8579g00010 557 SUPERFAMILY L-aspartase-like 1 557 IPR008948 GO:0003824
Vium8579g00010 557 PANTHER HISTIDINE AMMONIA-LYASE 1 557 IPR001106 -
Vium8579g00010 557 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 39 55 IPR022313 GO:0016841
Vium8579g00010 557 FunFam Phenylalanine ammonia-lyase 104 418 - -
Vium8579g00010 557 Gene3D - 1 103 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8579g00010 Vium-Chr8579 68544 70730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8579g00010 1 557 Monolignol Biosynthesis Gene Families AT2G37040 83.483 0.0 997
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8579g00010 K10775 - gmx:100801470 1028.47