Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8579g00008 ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGAGTTGCCACTGGCCCCGGAATTTCGCCCTACGGACACCGAATTTGCTGACCCAATTGCTTACATTTCAAAGATTGAGAAGCAAGCTGCCAACTTCGGGATTTGTAAGATTATCCCACCATTGCCCAAACCTTCAAAAAAATATGTTTTTTCTAATTTGAATAGGTCACTCTTGAAGTGCCCGGATTTGAGTCCAGATAACAGTTCATTAGGTGTTTGTAACTCATTGAAATTCGGTTCTGGGGATGGTAGTAGTGATGGGGTGTCTCGAGCTGTGTTTACTACTAGGCATCAAGAACTAGGCCAGACTCAGAGTGTGAAAAAAGCCAAAGGAACGGTTCAGAATCCACAGTCAGGTGTTCATAAGCAAGTATGGCAAAGCGGGGAGGTTTATACTCTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCAAGAAGCTTGCTAGGGTCAGTGAAGGATGTTTCTCCGCTGGTTATAGAGTCTATGTTTTGGAAGGCAACTTTAGAAAAGCCAATATATGTGGAGTATGCGAATGACGTGCCTGGGTCTGCTTTTGAAGAGTCAAAGGGTCAATTTCATTATAGTCATAGAAGGCTAAGAAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGTAATGGGTTGCGGAAGAGATACCCAAATTGATGACACTAAGGGTGCTTCTGTCCAAAGTGACGCTGACAAATGTTTACGGATGACCAAATCAGTTGATACTGTGTCAACATTTTCATCGAATGATGATTCACAATCTTTTAAAGAAAAGAGTTCAGATACCGGCAATGATATGCAAGGGACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACCTGCAAGTTATTGCACGATCGTCTGGCTCATTGACACGTTTTATGCCGGATGATATTCCTGGTGTGACTTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCACGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACTGGCTCATCAAAGACATGGTATGCTGTTCCTGGAGATTATGCGTTTGCTTTTGAGGAAGTCATACGCACTGAGGGTTATGGTGGTAATATTGATCATTTAGCCGCTTTGAAACTTTTGGGTGAAAAAACAACTCTTTTGTCACCTGAGGTAATTGTTGCATCTGGAATTCCTTGTTGCAGGTTGACACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGTGTAGCCAAGGAGGCTGCAGTGCGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATTTCAAGCGTTCCAAGGACACTATTACCTGGGGTGCGCAGTTCTCGATTGAGAGACCGTCAGAAAGAAGAGAGGGAGTTTTTAGTAAAACAGGCTTTCATAGAAGACATGCTACAGGAAAACAATCTGCTATCCATTCTTCTTGGAAAGGAAGCTGCTAAAAGAGCCGTTTTATGGAAAGCTGAGTTGCTGCCAGATTCCAGCAAAGGTTTTCAGTTGCCTGATTTAACTTCTACAACTGGAACCTCTGTGGCAAACATGCCAAATATTAGTTCTGCCAAAAAAAGTGGTCATTATCTGCTTGATGATGAGATGAGTTTGTATATGGATTCTTTGACTAATATAGATATTGGTGGCGATGATCTTCCCTATCACTTCGAAACTGATTCCGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGCTTTCCATTTATGGCTGTGATACAACCAACTGAGAAATTGACAATGGAACTTCCTGATAATCATCTAATTCAAGTTTCCTCTTCGGACTCTACTGCTGGTCTTCATAGTTCCATATCACGGGATCTATCTTTTTCTGAACTTTCATCAGTAAAGGAGATGCCAGATCAATCATTAAATAAGTGCAGTAAGTGTTGGAACACCTCCAGTAAATTTTTTAGGCCTCGGATTTTCTGCCTGGGGCATGCTGTTCAAATAGTAGATATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAGCGAAGTTGCGGTAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGATACGGCATCCCCAGAAAATTTAACCTTGATAGATCTGGCTGTTGATGGTGAAGAGCTTGATGAATGTGAAGACTGGACATCAACACTTGGCATTAACCTACGGAATTGGGTCCATACAAGAAATAATGCTCCTTCTAAACAAGTTCCTTGGACACTTGGGACATTGTTCCATGATAAATGTCCTGCTTCAAATATTTTAGCTTTAAATTGGCAGTCTCGGAGATTCCGGTCTAAAAGGTCAAGCCATTTAGCTCAGACTAAATCCTCTCACAGCATTGAGAGAAAGAAGGATGATCGGTTGGGTGGAAGAATAAATGACTCCACTGCTGACAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCACACGTGTTTCCCTGTAGCAAACATGGTCTGTGAACTCCAAGAGAAGTCCCAAAAGGTGTCTGCTACTTTAAGTGCGAATCATGATAGTTGTGTTTCTAAAACTCTTCAAGCTGAGGATTTAAGGACAGAGTGTGCATTGCCATGTACTTCTGCTTGTACTGAAATGTCTTCAATGCATCCTGAAATCCAGATTGCTGAAATGCCCATTAGCACGAAAATGATTGCTGATAAGTCACAACCTTCAAATTCCATTCCTGATCATGTTTTAATGATTGAAAAACTTGGAGCAGAGATTGAGAGTCAAACGATGCAGGAATCATATGTAGACAGAAATAATGATTTAACGCTCAGTCATTCTAAGATGCACCACAATACCAATGTCTCAGAAATATGTGGCAAGGAGAGCCAGGATTGTCAGTACAAGAAATGTTCTAGCACACTTTCAAATGCACCAGATGGAAATATTGAAATGATTAAAAAGACTGAAATTGCAGAAGCAGTTATCATTGATAGCCACTGTAATAGGTTAACATTGGATGATCAAGGGCATCAAGAATATCAGTCTAACTACAAAAGCAACAATGAGGAAGCTGCTGTATCAACTGCTTCAATGGTAAATCAATCTACACTTGCTTCTTTGGATGGAAACGTTGAAAGTCCAAATAATAATCATATCTCAGAAAGAATTAGTAGTCCTATTTTCCTAGAAAAGGCAAATGAGGAAGGAATTGATTCTATAAGCGAAATGGACAAGGAACCTCGAATTAATGAAAGCCCAATTAGCAAACATACTCCAAATGAAGTTTGTGAAGTTCGAAGAGAGCTTTATGCTTCTGTAGACTTGCAATGTAACGGAATCTTGGATGATGAGCAACAAGTAACTCAGGGTGGAAAAAATAGCAAAAGGGAAATAACTCATGTTTCAACTGAACAATGTTGTCCTTCGTCTGGGCAGTGTCAGATTGAAAGTGTAAAAAAAATTAATGAGGACCCTGTTTGCAGTTATGCTGCAAAAGGTGAAAATAAAAGCGTAACTTCAATAGAGTTAGGATGTTCTGAAGTTTCAGTGGAAGCATGTCCTAGCAAAGATTCCTGTATGCAATTTATTCCAGATAAAGAAAAAGAAATGACAAACCAGTCAGTTAATAGAATTGATGAGGAACTTTTCTCTGGATCGGATACATCGACAAAAGACTCTTTCCTATCAGTGCAGGAATGCTCAAAAATTGAGAACGAGATTTATGTTACAGAAAACATAAATGAAATCAAAGCTGATTTGTCACAATATAAAAGGGGGCTGGAGAGTTGTGAGTTAGCTACAGAAGTTCCCAGATTAAATTCTGAGAATAAAAAAAAGAGGAAAGTGGAACGAACAGGGAACCGATCTAATTCTGACAACTTTATTAGAAGTCCATGTGAGGGGCTGAGGCCAAGAGCTGGGAAGTTTGCCGCTGGAAAAAGTGGAGTGGAAATCAACCAAGTTGACAAGGAAAATCAGGTGGCTAAACGGGCAAGGAGATCTTCTGAAGTTTTGGTTCTTCGCAAAAATAAAAAAGATGGTGTTAAAAAGTCCCACAAGTGCGACCTCGATGGTTGCCGAATGAGTTTCAAGACTAAGGCAGAGTTACTGTTGCATAAACGAAACCTTTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGTTCCCACAAATATGCTTTGCTTCACCAGCGAGTTCATGATGATGAGAGGCCCCTTAAGTGTCCATGGAAAGGTTGTTCCATGTCGTTCAAGTGGGCTTGGGCAAGGACAGAGCACATACGCGTACATACTGGGGAGAAGCCTTATCACTGCAAGGTGGAGGGATGCGGCCTTTCATTCAGGTTTGTATCTGATTTTAGCAGACACAGACGGAAAACGGGACACCATGTGAAACCTCCTGCTTGA 4566 0.4087 MGSVEIPNWLKELPLAPEFRPTDTEFADPIAYISKIEKQAANFGICKIIPPLPKPSKKYVFSNLNRSLLKCPDLSPDNSSLGVCNSLKFGSGDGSSDGVSRAVFTTRHQELGQTQSVKKAKGTVQNPQSGVHKQVWQSGEVYTLEQFESKSKSFARSLLGSVKDVSPLVIESMFWKATLEKPIYVEYANDVPGSAFEESKGQFHYSHRRLRKRTYYKSRLDSSDCKQTVMGCGRDTQIDDTKGASVQSDADKCLRMTKSVDTVSTFSSNDDSQSFKEKSSDTGNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYGGNIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLSVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMLQENNLLSILLGKEAAKRAVLWKAELLPDSSKGFQLPDLTSTTGTSVANMPNISSAKKSGHYLLDDEMSLYMDSLTNIDIGGDDLPYHFETDSGALACVGCGILGFPFMAVIQPTEKLTMELPDNHLIQVSSSDSTAGLHSSISRDLSFSELSSVKEMPDQSLNKCSKCWNTSSKFFRPRIFCLGHAVQIVDMLQSKGGANVLIICHSDYQKIKAHASEVAVEIHSAFDYNEVPLDTASPENLTLIDLAVDGEELDECEDWTSTLGINLRNWVHTRNNAPSKQVPWTLGTLFHDKCPASNILALNWQSRRFRSKRSSHLAQTKSSHSIERKKDDRLGGRINDSTADKKLIQYSRRKFKSKHTCFPVANMVCELQEKSQKVSATLSANHDSCVSKTLQAEDLRTECALPCTSACTEMSSMHPEIQIAEMPISTKMIADKSQPSNSIPDHVLMIEKLGAEIESQTMQESYVDRNNDLTLSHSKMHHNTNVSEICGKESQDCQYKKCSSTLSNAPDGNIEMIKKTEIAEAVIIDSHCNRLTLDDQGHQEYQSNYKSNNEEAAVSTASMVNQSTLASLDGNVESPNNNHISERISSPIFLEKANEEGIDSISEMDKEPRINESPISKHTPNEVCEVRRELYASVDLQCNGILDDEQQVTQGGKNSKREITHVSTEQCCPSSGQCQIESVKKINEDPVCSYAAKGENKSVTSIELGCSEVSVEACPSKDSCMQFIPDKEKEMTNQSVNRIDEELFSGSDTSTKDSFLSVQECSKIENEIYVTENINEIKADLSQYKRGLESCELATEVPRLNSENKKKRKVERTGNRSNSDNFIRSPCEGLRPRAGKFAAGKSGVEINQVDKENQVAKRARRSSEVLVLRKNKKDGVKKSHKCDLDGCRMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHHVKPPA 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8579g00008 1521 SMART cupin_9 293 462 IPR003347 -
Vium8579g00008 1521 ProSiteProfiles Zinc finger C2H2 type domain profile. 1429 1458 IPR013087 -
Vium8579g00008 1521 Pfam jmjN domain 17 50 IPR003349 -
Vium8579g00008 1521 ProSiteProfiles Zinc finger C2H2 type domain profile. 1489 1520 IPR013087 -
Vium8579g00008 1521 MobiDBLite consensus disorder prediction 835 860 - -
Vium8579g00008 1521 SUPERFAMILY beta-beta-alpha zinc fingers 1469 1519 IPR036236 -
Vium8579g00008 1521 SUPERFAMILY Clavaminate synthase-like 294 460 - -
Vium8579g00008 1521 SMART JmjN_1 15 55 IPR003349 -
Vium8579g00008 1521 Gene3D Cupin 9 466 - -
Vium8579g00008 1521 ProSiteProfiles JmjC domain profile. 293 462 IPR003347 -
Vium8579g00008 1521 Gene3D Classic Zinc Finger 1427 1515 - -
Vium8579g00008 1521 ProSitePatterns Zinc finger C2H2 type domain signature. 1431 1453 IPR013087 -
Vium8579g00008 1521 ProSiteProfiles Zinc finger C2H2 type domain profile. 1459 1488 IPR013087 -
Vium8579g00008 1521 FunFam Probable lysine-specific demethylase ELF6 1456 1485 - -
Vium8579g00008 1521 ProSitePatterns Zinc finger C2H2 type domain signature. 1461 1483 IPR013087 -
Vium8579g00008 1521 ProSitePatterns Zinc finger C2H2 type domain signature. 1491 1515 IPR013087 -
Vium8579g00008 1521 MobiDBLite consensus disorder prediction 1328 1351 - -
Vium8579g00008 1521 MobiDBLite consensus disorder prediction 844 860 - -
Vium8579g00008 1521 SMART c2h2final6 1489 1515 IPR013087 -
Vium8579g00008 1521 SMART c2h2final6 1459 1483 IPR013087 -
Vium8579g00008 1521 SMART c2h2final6 1429 1453 IPR013087 -
Vium8579g00008 1521 SMART c2h2final6 1406 1428 IPR013087 -
Vium8579g00008 1521 MobiDBLite consensus disorder prediction 264 288 - -
Vium8579g00008 1521 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1072 - -
Vium8579g00008 1521 Pfam JmjC domain, hydroxylase 326 445 IPR003347 -
Vium8579g00008 1521 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Vium8579g00008 1521 SUPERFAMILY beta-beta-alpha zinc fingers 1417 1466 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8579g00008 Vium-Chr8579 40393 50920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8579g00008 1 909 C2H2 Transcription Factor Family AT5G04240 54.526 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium8579g00008 JmjC 2.5e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8579g00008 - - gmx:100799861 2466.42