Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8579g00007 ATGTGCAAATCCAGAAAGAGCACCGCTGCGGCACAACCCGAAAGCAGACGAAGCACAAACTCAAATAGAAGCATGACCAATTCCCCTCGTCCTCACCGGACGCAAACCCTGACATCGTCATCGTCCAACTACGATACCTCCACGAGCGAAGTCCCCGTCACAGAATCAAGAAGCTACGTGTTCGAAAACAACAACACCAACACCAACGACTTATTAGAGTGGTCAAAAACCTCTTCTATCTCAAGCCGCGCCTCTCTCTCAAGCCTCAAAGACACGCTCCCTGAAAGCCCTAACATCTACCACTTTTCAGAGATTTCCGCTGCCACCGCCAACTTCTCCGCCCCACGCCTCTCTTCCTCCTCCTGGCGCTGCTTAATCCGCCACCGCGATGTTGTTGTCTCTCGCCGCAATTTCCGCCAACAAATCGACCTCCCGGAGCTCAGCCACCGCCTCGCCATCATCTGCCGGAGTCACCACAGCAGCCTCGTCAAGCTCCTCGGCGCCTCCGTCTCCGGCGGTGTCATCTTTCTCGTTTACGAATTTGTCCCCGGCGCCAGCCTCGCCGACTGCCTCCGTAACCGCCGAAACCCTAGCTACACCGATCTCGTCACGTGGACCTCTAGGATGCAGATCGCCTCCGACATCGCGCATGGCCTCGATTACATCCATAATTTCTCCGGTTCAGACTCCGGTTCGGGATCCGGTTCTGGTTTCATTCATAATCACATCAAGAGTTCCAGCATTGTTATCACGGAGGATAATTTGCGCGCGAAAATATGCCACTTCGGCTCGTCGCATCTGTGCGGCGAGGCGGTCGCCGGAACTGGTGAGGAATCCGGTGCGCGGAGGGTGAGGATCGATGGGACAAGAGGGTACATGGCGCCGGAATTTCAGGTCAGCGGCGTAGCGACGAAGAAGAGCGACGTGTACGCGTTCGGCGTGGTGGTTTTGGAGCTGCTGAGCGGGGAAGAGGCGGTGAAATTCAAATTCAACGACGACGGCAGTTATCAGAGGACGAGCGTGGTGGATACGGCGAGAGTTGCGGCGGGGGAATACGGCGGTGTAAGGAAGTGGGTGGATAGGAGGCTGAGGGATTCTTTTCCGTTGAGTGTGGCGGAGAGGATGGTTCGGGTCGGATTAGACTGTGTCGGGAATGACCCGAATGAGAGACCGGACATGGGTCGGGTCTCGATTGAGGTGTCAAAGTTGTACCTGGAGTCGAAGGACTGGGATCAGAAAATGGGAACCGATATTGACTTGACGGTCTCGTTGGCCCCACGGTGA 1284 0.5607 MCKSRKSTAAAQPESRRSTNSNRSMTNSPRPHRTQTLTSSSSNYDTSTSEVPVTESRSYVFENNNTNTNDLLEWSKTSSISSRASLSSLKDTLPESPNIYHFSEISAATANFSAPRLSSSSWRCLIRHRDVVVSRRNFRQQIDLPELSHRLAIICRSHHSSLVKLLGASVSGGVIFLVYEFVPGASLADCLRNRRNPSYTDLVTWTSRMQIASDIAHGLDYIHNFSGSDSGSGSGSGFIHNHIKSSSIVITEDNLRAKICHFGSSHLCGEAVAGTGEESGARRVRIDGTRGYMAPEFQVSGVATKKSDVYAFGVVVLELLSGEEAVKFKFNDDGSYQRTSVVDTARVAAGEYGGVRKWVDRRLRDSFPLSVAERMVRVGLDCVGNDPNERPDMGRVSIEVSKLYLESKDWDQKMGTDIDLTVSLAPR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8579g00007 427 Gene3D Phosphorylase Kinase; domain 1 98 181 - -
Vium8579g00007 427 PANTHER OS09G0572100 PROTEIN 1 427 - -
Vium8579g00007 427 MobiDBLite consensus disorder prediction 1 59 - -
Vium8579g00007 427 Gene3D Transferase(Phosphotransferase) domain 1 183 422 - -
Vium8579g00007 427 MobiDBLite consensus disorder prediction 8 59 - -
Vium8579g00007 427 Pfam Protein tyrosine and serine/threonine kinase 141 396 IPR001245 GO:0004672|GO:0006468
Vium8579g00007 427 SUPERFAMILY Protein kinase-like (PK-like) 140 398 IPR011009 -
Vium8579g00007 427 ProSiteProfiles Protein kinase domain profile. 111 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8579g00007 Vium-Chr8579 35747 37530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8579g00007 95 415 Receptor kinase-like Gene Family AT1G51940 32.070 3.20e-44 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium8579g00007 PK_Tyr_Ser-Thr 1.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8579g00007 - - gmx:100820374 650.588