Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8575g00005 ATGAAAGCGCCAAATACCTTTTTTGGTGCACAACATAGAAGTTTTCGTGGGGTTTTCAACTTTTTGTGTGTCGGGGTTTTGTTTTTCTTCTTTTACAATCGCGACGATATCATTCGCAACCCGATTCTTAGGCAATCCTCGTATTTTGTTAGCCACAAGTTGCCTCAAAATGCGATTTTGGGAGATGGGTCTTCTGTGATTCATCGTCGAATGGTTGAAATCGGTGCCAATACTTCAAGTGTTGCCGGTGAGGATGATTTAGGTGTGAGAGATTCTGAATTCTGTTCTGGGTTGGTCCACCATGATGGTTATGCTAGTCCCTGTGAATTCTTAGAGGTTCATCCACAGTGCTCTTCTGATGGATATCTTGATTACTTGAAATTTTTCTATTGTACATGTCAGGGTTTTAGAGTTTTTGGTTATCTAGGGTTGGGTGTATGGATTGCTGCTTTGTTTTATCTCTTGGGGAACACTGCTGCAGACTACTTTTGCCCTTCACTTGAGAGATTGTCAAGGCTCTTGAAATTGCCTCCAACCGTAGCTGGGGTTGTGTTGCTTCCACTTGGGAATGGAGCACCTGACGTGTTTGCTAGTATAGCTGCCTTTGTGGGTGCTGAAAGTGGTGAGGTTGGTCTTAATAGTGTGTTGGGTGGTGCTCTTTTTGTTACCACTATTGTTGTTGGAACAGTGTCGCTATGCGTTGCGGAGAAGGAGGTTGGAATTGATCGAAGATGCTTTATAAGGGATGTGAGTTTCTTTCTTCTTACTCTGTTTTCGCTGCTTATGATTTTGGTTGTTGGTAAGGTGGGTGTTGGGGCGGCCATTGCTTTTGTATCCATTTATTTTGTGTATGCGTTCATTGTTGCTGCCAATGAGATATTGAGGAAACATGCACAGAGATTGAAATTAGATGTTGTCACACCAATGCTTCCTGTCCAGGGAAGTGTGTTCTCTCTAGGCGTGGAAGATGATATTCCGATGTATAGCTCTTTGCTTGAAGACACTGAAAGCGATCCTCCCCGCCTTCCTCCATCGTTGCCCCAGTGGATGTGGTCTTCAAATGTGGCAATATATTCAAATCAAACAAGCAAAATGAGCTTTTTGGATGATGAAAGTCCTCCCTGGGGATGGACTGATGATGGGTCTGGGGAGAACACCAGGGTGTCCTTCTCAGTTTCAAAACTTTTTCTGCTGATGGAGATTCCACTGGCTATTCCTAGGCGATTCACAATTCCAATGGTCAACGAAGAAGTATGGTCAAAACCTTATGCTGTCATCAGTGCTTCATTGTCTCCCATTCTCCTGGGCCTTTTGTTTAGCACCAGAGACAATGTGAGTAATCAGGGTGTTATTCTTTCTTATTGTGTCGGTGTTGCTCTTGGATGTGCATTTGGTGTTCTCGCTTATAAATACACTGTATCTGATCATCCACCACGTCAATTTTTGCTTGCTTGGGTACTTGGAGGATTCATCATGAGCATAGTTTGGTTCTACATAATAGCGAACGAGCTTGTGGCTCTATTGGTAGCATTTGGTGTAATTTTCGGAATTAACCCATCCATCTTGGGGTTAACTGTATTAGCATGGGGAAATTCAATGGGAGATTTGATGTCAAATATTGCATTGGCATTGGAAGGAGAAGATGGAGTTCAGATTGCTTTATCTGGATGCTATGCAGGTCCTATGTTCAACACACTTGTTGGTTTGGGAATCTCGCTGCTGCTTGGGGCCTGGTCTAAGAAACCCTCTTTGTACGTGGTGCCTAAAGATAGTAGCTTATTTTACACCATGGGATTTTTGATCGCAGGACTGCTATATGCACTTGTTTTGCTACCTACAAAGAACATGCATCCTAACAGAACATTAGGAATGGGTCTCATCACCCTTTATGTGATATTTCTTTCTTTCAGGATATGCACTGCAATGGGATTTCTAACAGTTGCTGGTTGA 1950 0.4297 MKAPNTFFGAQHRSFRGVFNFLCVGVLFFFFYNRDDIIRNPILRQSSYFVSHKLPQNAILGDGSSVIHRRMVEIGANTSSVAGEDDLGVRDSEFCSGLVHHDGYASPCEFLEVHPQCSSDGYLDYLKFFYCTCQGFRVFGYLGLGVWIAALFYLLGNTAADYFCPSLERLSRLLKLPPTVAGVVLLPLGNGAPDVFASIAAFVGAESGEVGLNSVLGGALFVTTIVVGTVSLCVAEKEVGIDRRCFIRDVSFFLLTLFSLLMILVVGKVGVGAAIAFVSIYFVYAFIVAANEILRKHAQRLKLDVVTPMLPVQGSVFSLGVEDDIPMYSSLLEDTESDPPRLPPSLPQWMWSSNVAIYSNQTSKMSFLDDESPPWGWTDDGSGENTRVSFSVSKLFLLMEIPLAIPRRFTIPMVNEEVWSKPYAVISASLSPILLGLLFSTRDNVSNQGVILSYCVGVALGCAFGVLAYKYTVSDHPPRQFLLAWVLGGFIMSIVWFYIIANELVALLVAFGVIFGINPSILGLTVLAWGNSMGDLMSNIALALEGEDGVQIALSGCYAGPMFNTLVGLGISLLLGAWSKKPSLYVVPKDSSLFYTMGFLIAGLLYALVLLPTKNMHPNRTLGMGLITLYVIFLSFRICTAMGFLTVAG 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8575g00005 649 Gene3D - 425 639 IPR044880 -
Vium8575g00005 649 Gene3D - 176 308 IPR044880 -
Vium8575g00005 649 Pfam Sodium/calcium exchanger protein 486 638 IPR004837 GO:0016020|GO:0055085
Vium8575g00005 649 Pfam Sodium/calcium exchanger protein 146 288 IPR004837 GO:0016020|GO:0055085
Vium8575g00005 649 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 19 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8575g00005 Vium-Chr8575 40675 43113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8575g00005 91 645 Antiporters AT5G17860 41.831 9.92e-140 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8575g00005 K13754 - gmx:100796101 1113.6