Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8574g00002 ATGGCTGAGGCTTTGCTCGGAATTGTAATTAAAAACCTGCAATCTTTTGGCCAAGACCAACTTGCAACGTTTTGGGGTGTTCACCGACAGACTCAAAAGCTTTCCAGCAATCTCACCGCAATTCGTGCTGTCCTCAGAGATGCTGAGAGAAAACAAATCACAAGTCATGCTGTCAAAGATTGGCTGCAGAAACTCACAGATGCAGCATATGTGTTGGATGATATCTTAGATGAATGTTCAATTCACTCCACAAAAGTGAATTTTGATGATGCACATACTTCATGCCTATCCCGTCTCCATCCTAATGACATTCTCTTTCGTTTCAATATTGGCAAGAGGATGAAAGACATCACCCGAAGATTTCATGACATTCACGAAGAAAGGAGCATGTTTAATTTAGAACCCGGTGTCACAGAGGTCCAAACAATCCATGATAATTGGCGCCAAACTAGCTCTGACATTACAGAACCTGTAATTTATGGCAGAGACCAGGATCGAGAGCAAATTGTGAAGTTTCTTCTGGAAGACGCTAGTAACAGTGAAGAGGTCTCTATCTTTCCCATAGTTGGTATGGGTGGACTTGGAAAAACAACATTAACCAAGAAGGTTTTCAATGATCACAGGATACGCAAACATTTTGAATTGACAATTTGGGTTTGTGTTTCTGATGATTTCAACACCATGACAATACTACAATCCATCATAGAATGCATCGCCGGACAAAATCCCAATATCAATAGCTTAGAAGCAATGCGGAAAAAGGTTGAAGACGTGTTGCATGGGAAGAGGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCCAGAGAAATGGGAGCAGTTGAAGGGAAAGTTGCAGTGCGCAAGGGCAGCAAAAGGAGCTACCATTTTAGTCACTACTCGACTCGAGGAAGTTGCTTCCACCATGCAGACGCATCCTGCTTACCGTTTGAAAGAATTGCCAGGAGACGAAAGTTGGTCGTTGTTCAAATACCATGCGTTTGGACCAAACCGAGAAGAAAAGGAAGAGCTCGTGGCAATTGGCAAAGAGATCGTGAGAAACTGCATTGGTTTGCCGCTTGCCATAAAAACACTGGGAAGCCTCTTGCGTGATCAAAGTGAGGTAAGACAATGGATATATGTAAAGGAAAGTAGTTCTAAGACAAATGAGGAAAATTCTATTATGCGTGCTTTGAAACTTAGCTATTCTAATTTGGAGTTGTCATTGCGGAGATGCTTTTCTTTTTGTGCAATTTTCCCCAAAGATTTTGAAATAGACAAGGAAGAATTGATTCATCTCTGGATGGCTAATGGGTTTATTGAAAGTGAAAGAAACATAGAAGTGGAGGATGTTGGAAATAAAGTGTGGAATAAATTATACAGTAGATCATTTTTTCAGGAAGCAAAGTGTGATGAGTTTGGTATGGTCAAAAGTTTCAAGATGCATGATCTATTTCATGATCTTGCCCAGTCTATTATGGGTGAAGAATGTGCGGCTTTTGTGGAAGGAAGGTTGACTCCGTTGTCAAGTAGAGTTCACTATTCAACCTTGTTATCTTCTGATGTTTCTTTTGGACGATTCAAGCATGCTTTCAAGAAAGTTGAATCCCTGCGGACTTTTCTTGATTTGCGGACTTCTTTTGTTCTTGGTAATGTTGCCCCGGTGCCATCAAACCATTCTCTCCGAGCATTATGCACAAGGTCTTCTTTGTTGTCCCCACTCAAGGATTTAACACATTTGAGATATTTGAGTTTGAATTGTGGTTATAAAGCAAACTTAAATAACGTTATTTGTCAAATGCGGAAATTGCAAATTTTGAAATTGAAACGTTCAACATATCTTCATGGACTGCCCAAAAACTTGACACAATTACAAGATCTAAGACATATTGTGATGGATTATTGTAATTCAGTAGTAGAGACGCTTCCCAAAATTAGCAAGTTAAGGCATCTAAGAACACTAAGCATTTTCGTGGTGGGTTCAAAGCCAGGGTGTGGCTTAGCAGAGTTGCATGGCTTAAATCTGGGAGGCAGGCTAAGAATCAGAGGCCTTGAGAACGTTCCGAATGAATGGGATGCTAAACAAGCAAATTTGATTGGTAAGAAGGACTTGAATATCCTGCACTTGTCATGGGATGGTAATGCTAATCCAAAAGGTAGTGATGTAAGTGTGGAGAGAGTATTGGAAGCCCTAGAACCTCCCTCAACTCTCAAGAGTTTTGGGATGAATGGATATAAAGGAAGACAGCTACCCAGTTGGATGAGAAGTTCTCTAGTTTTGAGAGACTTGGTGGAAGTTGAGCTCTCCGGCTGTGACAACTGTGAGGAGCTTCCCCCACTTGGTAAACTAGCACACTTGAAAAGGCTAAAGGTGAGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGACGTATGACGGCGTGGAGGAGAAGGCATTTCCATCGTTGGAGGAACTGATTGTTGATAATTTACCAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAGATGGTCCCTCGTCTTTCCCAATTAAGAATTGATGATGTGTTGAACTTTAAAGTCCCACGTCTTCCTTGTGTTGAGACAGTTCATGCTAGAGGAATTGAGGCAGTGACTTCTTTCATGGAAGGGGTTGGGGAGAGTATGGCTTGTCTAAAGACCTTAAGCATTAAATTCATTAAAGGAGTGGTGGTATTACCCGACGAATTCAGGAGGTTGGGTGCACTACAGGAACTATACATTACAGAATGGTATGATGTGGAGTATTTTCCAGAACACGTGCTGGAAGGTCTAACTTCTCTTCGAACTTTGTCCATTCAATACTGTGAGAAATTGAAATCGTTGTCTGAAGGTGTGCGACATTTGGCTTGTCTTGAGAATTTGACAATCGGTAATTGTCCAGAGCTGGTGGCTCTACCAAGCAATATGAGCCAACTAACTGCCCTGCGGAAGGTTTCAATCAGTTATTGCAGCACATTACCAGATGGCTTACAAGGTGTCCCTTCCCTAGGAAGTTTGGATATATCATGTTGCAAATGTAGTTCATTACCGGACTGGCTGGGAGACATGACTTCTCTTCAAAAATTAAGTATTGTGTATTGTAAGGAGTTGAGGTCAGTGCCGAGTAGCCTTCAACACCTCACCAACTTGTCTCATTTAAGGATAGACGGATGTCCTCATCTGAAAAAGCGGTGCAAGAGGGAAACAGGAGAGGATTGGCAATATATAAAGCATATTCCGCAATTGGAACTATATTTCAGGAGGGAAACGACGCTTTCAGTGGAAGGGGCACATGGATGA 3306 0.4156 MAEALLGIVIKNLQSFGQDQLATFWGVHRQTQKLSSNLTAIRAVLRDAERKQITSHAVKDWLQKLTDAAYVLDDILDECSIHSTKVNFDDAHTSCLSRLHPNDILFRFNIGKRMKDITRRFHDIHEERSMFNLEPGVTEVQTIHDNWRQTSSDITEPVIYGRDQDREQIVKFLLEDASNSEEVSIFPIVGMGGLGKTTLTKKVFNDHRIRKHFELTIWVCVSDDFNTMTILQSIIECIAGQNPNINSLEAMRKKVEDVLHGKRYLLVLDDVWNEDPEKWEQLKGKLQCARAAKGATILVTTRLEEVASTMQTHPAYRLKELPGDESWSLFKYHAFGPNREEKEELVAIGKEIVRNCIGLPLAIKTLGSLLRDQSEVRQWIYVKESSSKTNEENSIMRALKLSYSNLELSLRRCFSFCAIFPKDFEIDKEELIHLWMANGFIESERNIEVEDVGNKVWNKLYSRSFFQEAKCDEFGMVKSFKMHDLFHDLAQSIMGEECAAFVEGRLTPLSSRVHYSTLLSSDVSFGRFKHAFKKVESLRTFLDLRTSFVLGNVAPVPSNHSLRALCTRSSLLSPLKDLTHLRYLSLNCGYKANLNNVICQMRKLQILKLKRSTYLHGLPKNLTQLQDLRHIVMDYCNSVVETLPKISKLRHLRTLSIFVVGSKPGCGLAELHGLNLGGRLRIRGLENVPNEWDAKQANLIGKKDLNILHLSWDGNANPKGSDVSVERVLEALEPPSTLKSFGMNGYKGRQLPSWMRSSLVLRDLVEVELSGCDNCEELPPLGKLAHLKRLKVSGMKNVKWIDGETYDGVEEKAFPSLEELIVDNLPNLERLLRDEGVEMVPRLSQLRIDDVLNFKVPRLPCVETVHARGIEAVTSFMEGVGESMACLKTLSIKFIKGVVVLPDEFRRLGALQELYITEWYDVEYFPEHVLEGLTSLRTLSIQYCEKLKSLSEGVRHLACLENLTIGNCPELVALPSNMSQLTALRKVSISYCSTLPDGLQGVPSLGSLDISCCKCSSLPDWLGDMTSLQKLSIVYCKELRSVPSSLQHLTNLSHLRIDGCPHLKKRCKRETGEDWQYIKHIPQLELYFRRETTLSVEGAHG 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8574g00002 1101 Gene3D Ribonuclease Inhibitor 856 994 IPR032675 -
Vium8574g00002 1101 PRINTS Disease resistance protein signature 185 200 - -
Vium8574g00002 1101 PRINTS Disease resistance protein signature 258 272 - -
Vium8574g00002 1101 PRINTS Disease resistance protein signature 356 370 - -
Vium8574g00002 1101 PRINTS Disease resistance protein signature 931 947 - -
Vium8574g00002 1101 Pfam Rx N-terminal domain 6 87 IPR041118 -
Vium8574g00002 1101 Pfam NB-ARC domain 163 405 IPR002182 GO:0043531
Vium8574g00002 1101 Gene3D - 6 117 - -
Vium8574g00002 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 417 IPR027417 -
Vium8574g00002 1101 CDD RX-CC_like 2 124 IPR038005 -
Vium8574g00002 1101 Gene3D Ribonuclease Inhibitor 995 1086 IPR032675 -
Vium8574g00002 1101 FunFam Probable disease resistance protein At1g63360 403 492 - -
Vium8574g00002 1101 PANTHER DISEASE RESISTANCE PROTEIN RP 36 828 IPR044974 GO:0006952
Vium8574g00002 1101 SUPERFAMILY L domain-like 481 850 - -
Vium8574g00002 1101 Gene3D - 145 315 IPR027417 -
Vium8574g00002 1101 SUPERFAMILY RNI-like 851 1065 - -
Vium8574g00002 1101 Gene3D - 409 492 IPR036388 -
Vium8574g00002 1101 FunFam Probable disease resistance protein At1g61300 141 315 - -
Vium8574g00002 1101 Gene3D Ribonuclease Inhibitor 516 855 IPR032675 -
Vium8574g00002 1101 Gene3D - 321 407 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8574g00002 Vium-Chr8574 32905 38334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8574g00002 188 657 WRKY Transcription Factor Family AT5G45050 22.004 2.27e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8574g00002 - - vum:124833357 1701.8