Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8573g00012 ATGGGAAGAGCTCCATGTTGTGACAAGGCAAGTGTTAAGAAAGGGCCATGGTCACCAGAAGAAGACACAAAGCTCAAGGACTACATAGACAAGAATGGAACTGGAGGAAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTTAAGAGATGTGTGAAGAGTTGCAGATTGAGATGGCTCAATTATCTCAGACCCAACATTAAGCATGGAGATTTCTCAGATGAAGAAGACAGAATAATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGAAGAACTGACAATGATATCAAGAACTACTGGAACACCAAGTTGAAGAAAAAGCTCATTGGGTTGCTTCCTCTTTCTCATCACACAAAACAACCTTCATTCCCATCATCTGCCCTTCAAAACCCTCCACCCTCTCCTTCGTCTCACCAACTGTACGGAGAATACGGCAACTACATCCCTGTAACAGCATCTTTCACAGGCATGGAACATCTTTCTCTTCCTTCAGCTAACTATGAAAGCACGACACCCTCAGTTTCTCAAACTTTCTACCAAAACCAAGACTCCATGGTCAGCGTTAGTCCCATGCAATGCTATTACCCTGTCGCCGACAGCATGCTCATGTTTGGAAGCGAAGGAAGTTGCAGCTCCTCCGACGGAAGCTGCACTCAGGGAAGAGAGATGAACCATAACTTGATGCTCAGTTACAACACTAACGATGGAGATAAGTCATGTGTTGGAGGGTGCTTCGACCAAACGCTAACAACGTTGGATTATGATCTCGAGGATATTAAGCAACTGATTAGCAGCAGCTTGAATAATAATAATGTTGATGAAAACAAGAGAGAAGAGAAGGCGATGTACTGCTGCTATTACTAG 891 0.44 MGRAPCCDKASVKKGPWSPEEDTKLKDYIDKNGTGGNWIALPQKAGLKRCVKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLIGLLPLSHHTKQPSFPSSALQNPPPSPSSHQLYGEYGNYIPVTASFTGMEHLSLPSANYESTTPSVSQTFYQNQDSMVSVSPMQCYYPVADSMLMFGSEGSCSSSDGSCTQGREMNHNLMLSYNTNDGDKSCVGGCFDQTLTTLDYDLEDIKQLISSSLNNNNVDENKREEKAMYCCYY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8573g00012 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium8573g00012 296 Gene3D - 69 136 - -
Vium8573g00012 296 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium8573g00012 296 FunFam Transcription factor RAX3 7 68 - -
Vium8573g00012 296 CDD SANT 71 111 IPR001005 -
Vium8573g00012 296 PANTHER OS09G0431300 PROTEIN 1 268 - -
Vium8573g00012 296 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vium8573g00012 296 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vium8573g00012 296 CDD SANT 16 62 IPR001005 -
Vium8573g00012 296 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vium8573g00012 296 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vium8573g00012 296 SMART sant 13 64 IPR001005 -
Vium8573g00012 296 SMART sant 67 115 IPR001005 -
Vium8573g00012 296 FunFam Transcription factor MYB36 70 139 - -
Vium8573g00012 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vium8573g00012 296 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8573g00012 Vium-Chr8573 175227 177515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8573g00012 1 119 MYB Transcription Factor Family AT5G57620 90.756 2.90e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium8573g00012 Myb_DNA-binding 9.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8573g00012 K09422 - gmx:100779919 439.499