Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8573g00001 ATGCTCGCATTGCATTTTCGATCCTCTTTTGGTTCTTCTTTTCGTCTTTCTTTCTGTTTCTCTCGAACTGTTAGGGTTCCTTCTCTCGTCTCTTTCCCTCTTTCTCTCTTCTCTGTCCCTCTCCGCGTCATGTCTAAGCCACCATCCGCCTTCGACGCTCTCATGGCCGCCGCTAAGAAGAATTCCAAATCCAAAACATCCAAGCTTTCATCACCTCCCAAGAAAAGAAAATCTCCACTCTCCACTTCCTCACAAAACCCTAGCAACCCCAAATCTCCCAAACTGCCTTCTCCGCCCATAACCGTTGAACCGGAGCAAGCAGTTAAACAGGAAGAAGTTGCTAAACCAGAAGCTGTTAAGCCGGAACCGCGGAAGGTACGCCAACTGTCAACGTCTTCTTCGAAGGGGAAGACGGAGGAGCTGAAGAAGCAAGTTGCGCAGCTGAAGCAGAAGCCTTCCAGTTTCGATCCCGCTTCGATGATTGCATGGGAGAAGGGACAGCCCGTGCCGTTTCTCTTTCTCGCCTTGGCATTCGATATGATTTCTCAGGAAAGTGGAAGAATAGTTATCACTGACATTGTTTGCAATGTGCTGCGGACTGTGATGCTGGCCACGCCGGAGGATCTTGTTCCCGTCGTTTACCTCTCCGCAAACCGGATTGCGCCTGCTCATGAAGGGTTGGAATTGGGAATCGGCGAGTCGATCATTTCCAAGGCGCTCGCGGAGGCTTATGGAAGGAACGAGAATTGGATTAAGACTCAGTATCAGAAAAAAGGTGATTTGGGCTTGGTCGCCAAAGAGAGCCGTTCATCTCAACCTATGATGTGGAAGCCTGAAGCATTAACCATCAGGAAGGTTTTCAACACTTTTCGCCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAAAAAAAGAATCATATCAAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGTTTGCTTCAGACGAAGTTGCGAATTGGTTATGCAGAGCAAACTCTATTGGCTGCACTAGGCCAAGCTGCGGCATACACTGAAGAACACTCTAAACCGCCTCCTGAAATTCAGTCTCCTTTTGAAAAGGCTTCGGATATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTACGGAGGGTCTATGGAAGCTTCCAAAGACTTGTAAATTTACTCCAGGTGTTCCAATTAGACCTATGCTATCAAAGGCAGCAAAAAGTGTAACTGAAGTTCTGAACAAATTCCAGGATGTGGAATTTACCTGTGAATACAAATACGATGGAGAGCGTGCCCAGATACATTACTTGGAGAATGGTTCAGTTGAGATTTACAGTAGACAAGCAGAACGGAACACCGAGAAGTTTCCTGATGTTGCTGCTGCAGTTTCAAGGTTGAAGAAAACAAGTGTATCTTCATTTATTCTTGATTGTGAAATTGTTGCATATGACCGTGCAACACAAAAACTTCTTTCTTTCCAGACCCTCAGTACTCGAGCTCGCAAGAAAGTAGAAATTGAAGATATAAAGGTTAATGTTTGTGTATTTGCTTTTGATTTGTTGTATCTAAATGGCCAAGAACTTCTTCAGGAAAACCTTAGAGTCCGCAGAGAGCATTTATATGCCTCTTTTGAGGAAGAATCTGGTTTTCTCCAGTTTGCAACAGCATTAACTTCAAATGATGTTGAGGAGATACAGAATTTTCTTGACCAAGCTGTTGGTGCTAGTTGTGAGGGATTGATTATTAAGACACTAAATGAGGACGCTACATATGAACCTGCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAATTTAGGGGACTCTGTAGACTTGGTACCTATTGCTGCTTTCCATGGGCGTGGAAAACGTACAGGAGTCTATGGTGCCTTCCTCCTTGCTTGCTATGACAACAATAATGAAGAATTTCAAACTATTTGCAAGATTGGAACGGGTTTCTCTGAATCTGTACTTGTAGAACGTTCTTCCAGTCTTCGCTCTCAAGTGATTTCCAAGCCGAAGTCATACTATAGATTTGGGGAAACACTCAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAGAGCGGCAGACCTGACCATTAGCCCTGTCCACCGTGCTGCAGCGGGCATAGTAGATCCGAACAGGGGCATCTCTCTTCGATTTCCAAGGCTGGTTCGAGTCCGGCATGACAAAGCTCCTGAACAGGCCACATCATCTGAGCAGATTGCTGAGTTGTATAAAGCTCAAAAACACAATCAAGCGAATAAACAAGATGACGAAGATGAAGAAGATTATTGA 2361 0.4447 MLALHFRSSFGSSFRLSFCFSRTVRVPSLVSFPLSLFSVPLRVMSKPPSAFDALMAAAKKNSKSKTSKLSSPPKKRKSPLSTSSQNPSNPKSPKLPSPPITVEPEQAVKQEEVAKPEAVKPEPRKVRQLSTSSSKGKTEELKKQVAQLKQKPSSFDPASMIAWEKGQPVPFLFLALAFDMISQESGRIVITDIVCNVLRTVMLATPEDLVPVVYLSANRIAPAHEGLELGIGESIISKALAEAYGRNENWIKTQYQKKGDLGLVAKESRSSQPMMWKPEALTIRKVFNTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAAYTEEHSKPPPEIQSPFEKASDIVKQVYSVLPDYDKIISALLTEGLWKLPKTCKFTPGVPIRPMLSKAAKSVTEVLNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRQAERNTEKFPDVAAAVSRLKKTSVSSFILDCEIVAYDRATQKLLSFQTLSTRARKKVEIEDIKVNVCVFAFDLLYLNGQELLQENLRVRREHLYASFEEESGFLQFATALTSNDVEEIQNFLDQAVGASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMDNLGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQTICKIGTGFSESVLVERSSSLRSQVISKPKSYYRFGETLNPDVWFEASEVWEVRAADLTISPVHRAAAGIVDPNRGISLRFPRLVRVRHDKAPEQATSSEQIAELYKAQKHNQANKQDDEDEEDY 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8573g00001 786 Pfam DNA ligase N terminus 170 345 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium8573g00001 786 Pfam ATP dependent DNA ligase C terminal region 641 752 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vium8573g00001 786 CDD Adenylation_DNA_ligase_I_Euk 401 619 - -
Vium8573g00001 786 Gene3D DNA ligase/mRNA capping enzyme 441 566 - -
Vium8573g00001 786 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 152 403 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium8573g00001 786 Gene3D - 145 414 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium8573g00001 786 ProSitePatterns ATP-dependent DNA ligase signature 2. 590 616 IPR016059 GO:0003909
Vium8573g00001 786 FunFam DNA ligase 412 618 - -
Vium8573g00001 786 CDD OBF_DNA_ligase_I 624 769 - -
Vium8573g00001 786 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 66 784 - -
Vium8573g00001 786 MobiDBLite consensus disorder prediction 60 90 - -
Vium8573g00001 786 Gene3D - 621 784 IPR012340 -
Vium8573g00001 786 ProSiteProfiles ATP-dependent DNA ligase family profile. 518 654 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium8573g00001 786 NCBIfam ATP-dependent DNA ligase 228 768 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vium8573g00001 786 SUPERFAMILY Nucleic acid-binding proteins 624 770 IPR012340 -
Vium8573g00001 786 FunFam DNA ligase 621 780 - -
Vium8573g00001 786 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 436 444 IPR016059 GO:0003909
Vium8573g00001 786 MobiDBLite consensus disorder prediction 108 124 - -
Vium8573g00001 786 MobiDBLite consensus disorder prediction 60 140 - -
Vium8573g00001 786 FunFam DNA ligase 147 414 - -
Vium8573g00001 786 Gene3D - 422 620 - -
Vium8573g00001 786 Pfam ATP dependent DNA ligase domain 412 616 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium8573g00001 786 MobiDBLite consensus disorder prediction 766 786 - -
Vium8573g00001 786 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 404 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8573g00001 Vium-Chr8573 20145 34122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8573g00001 29 784 Core DNA Replication Machinery Family AT1G08130 65.370 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8573g00001 K10747 - gmx:100783155 1204.12