Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8571g00002 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCAACAAACCCTGAGCTTCTCGCGGTTCATGAGGAGCTTGTCCAGGCAATTAAGGACGCAGAAGAAGGACTTTTTCACCTAAAACGTGCACGATTGTTACAGGAAGCGGATGCAATTCTGCATAACACTAATATTTTTGCTGAAGAGGAGAAAGTGGAACTCCTTGATCCCAGAGATGTTGAACCAGAACCTTTGGAGGGAAAAAGTCATTCTGTTGGATCTAAATGTAGATTCCGTCACATAGATGGGCGCTGGTACAACGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAAGTTTCATTCCTTACACCTACGTCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGAGTTGATGTTCACTTGTCCGCTCTTAAGAAATTTGTCCCTACAATCTGGAAGGAATCCCTTGTCGGATCAAGCATATGGGCAGTCTCAACTGCAAATTCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTGGGACGAAAAGGCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGTAGTACTGTGAAACTTGGTGCAGAACAAATTACACTGTCTGAGCATGCAGAAGTGAGTGACTCAGAGAGTGATTCCAGCATACCGCAATCTGAGTCCAGTGACTATGAGGAGGATGATGAATCTCAAGGTTTAGGATTTCTGGAGAGTACCAACCTACAGAGAGGAGTTCAAACTGAAACTGCAACATTTGCCACTTGGGAAAACCACACCAGAGGCATAGCGTCCAAAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACGGGTCAGGGAATGCTGGACCCCATACCAGTGAAGATGATACCACCAAAGCAATCCTTGGATCATGCTCTTGAGTCTCATAGAAGGGAAGAGAATGAAGACAAGGAAATGAAGAAGAAACGGAGCCGAGGTGGCAAGAGAAAACGTGAGAAGAAATTTGCAGAAGCAAATCGTGCAGCAAAAGAGGAAGAGGAGTCAACATCAGATGTCTTTGCATTGATAAACAATCAGCTGGCAATGCACAATGAGGCTTTCGGTGGTGGATCAACGAAGAAGCAGCAAAGTAAAGGTTCCGGGGAAGGTAGAAAGGTAGATAGACGAGCACTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAAGGTTGAAAAGCTCGAGCAAATTGTGAATGTCAATAAGAAAGAGAAGGCTGTGTATGAGGCTGCTATGAGAAAACTAAATGAAACCCGCAAAGCCTTGGCTGATGCCGAAGCAGTTCATGCCTCTGCCTCAAATGCTGTTGTTAGCAAAGAAAAAGAGAAAAGGTGGCTCAAGTTTTAG 1491 0.4487 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNPELLAVHEELVQAIKDAEEGLFHLKRARLLQEADAILHNTNIFAEEEKVELLDPRDVEPEPLEGKSHSVGSKCRFRHIDGRWYNGQVVQLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGVDVHLSALKKFVPTIWKESLVGSSIWAVSTANSGTWREAELESWDEKAGVGQVVFRDDGSTVKLGAEQITLSEHAEVSDSESDSSIPQSESSDYEEDDESQGLGFLESTNLQRGVQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKMIPPKQSLDHALESHRREENEDKEMKKKRSRGGKRKREKKFAEANRAAKEEEESTSDVFALINNQLAMHNEAFGGGSTKKQQSKGSGEGRKVDRRALVAYEEEVKDLKMKVEKLEQIVNVNKKEKAVYEAAMRKLNETRKALADAEAVHASASNAVVSKEKEKRWLKF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8571g00002 496 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Vium8571g00002 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Vium8571g00002 496 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Vium8571g00002 496 Coils Coil 425 452 - -
Vium8571g00002 496 Coils Coil 362 382 - -
Vium8571g00002 496 ProSiteProfiles G-patch domain profile. 295 341 IPR000467 GO:0003676
Vium8571g00002 496 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Vium8571g00002 496 MobiDBLite consensus disorder prediction 339 384 - -
Vium8571g00002 496 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Vium8571g00002 496 MobiDBLite consensus disorder prediction 365 384 - -
Vium8571g00002 496 Gene3D - 106 178 - -
Vium8571g00002 496 MobiDBLite consensus disorder prediction 399 419 - -
Vium8571g00002 496 Coils Coil 456 476 - -
Vium8571g00002 496 SMART G-patch_5 293 339 IPR000467 GO:0003676
Vium8571g00002 496 MobiDBLite consensus disorder prediction 339 356 - -
Vium8571g00002 496 Pfam G-patch domain 295 331 IPR000467 GO:0003676
Vium8571g00002 496 MobiDBLite consensus disorder prediction 238 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8571g00002 Vium-Chr8571 2103 8424 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium8571g00002 G-patch 4.7e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8571g00002 - - gmx:100796284 761.525