Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium856g00007 ATGGAGTCCACCGTCATGGACTGCAGTCCTTCCTCCAGTGCCGCCCCGCCCCGCCGCAGTGGTCGCCGGAAGCTGGTTCAATCGACGCTCTTCCCTCTCAAGCCACCGGAGCCCGTTGAGAAGAAGGACAAAGAGGACGAACCCGACGAGGATTACTCTGAGGCTAAGAATAACAAGAAGAGGAAGAGGTCCAAGGCAAAAGCCACTCCTCCGATCGACGAGGATTACTCTGAGGCTGAGAATAACAAGAAGAGGACGAGGTCCAAGGCAAAAGCCACTCCTCCGAAAAAAGGTTCTTCTAAGCGTCCCACGCCAAAGAAAAAAGCAACTGCTAATGGCAGGTCAACTTCGCAGCAGGTGTTGGCTAATTCCGATCAGGTTAAGGCACCTGTGTATGATTTGTTTCTAGAGGCAAAATTGGCTGCTGAGGAAGATTCGAGGATATATGCAGGACGTCAGGTACATCCATTTTTTTCATTATGGAAGGAGGGAAAAAAAGTTCATGATGTGAGTGAATCAGGAAGTAATTTACCAACAACTAAGAGTAAGCATAAAAGGACTACTTGCGGCCCTATTCACGTATTTGAAAATGTTAAGGATGATACGTCATCAGTTGACTGGAGAAACTGGATGTTTATGGAGAATATCACCTCCATGAACTATGGTCAAGAGAGTGTAAATTCATCTGTTTTCGAGGGTTCTGTTGAATCCTTAAATTTTGATAAGCTTCACAGTTTTTTGAATCCATCAGGCATTTCAATTTCTCAGAATGCCTTATCACCATCAAACCCATCTTCACTAGCAGAGCAATCATCATCTCTGACGTGTGGAAATGCTGAACTGGACATGAAGGTGGATGAATCTGTTACTCCAACTGTGCAAGCTGGCATTTTTAGAAAGTCTAAAGATACCGAACCACTGAATAGATTTCTTCAAGAAAGTATGAGATCATACTACCGTAGCTGTTTAGATATAGAGGAGTCCAACTTATGGACACACAAATATAAGCCAACGAAGGCTGTTGAGGTATGCGGGAATGATGAATCTGTTAATTTCTTGAGTGATTGGCTACATTGTTGGCATGAAAGGCAATATAAAAGCAGGAATGATAATACTGACACTGATAAAAGCGGCATGCAAGATGTTGAAGATGAAGATGATGATTATAAATGTTCTTATAGTGACTGTGACTCAGAAGATATGAATGAGAAGGATTCCCTGCAAAATGTTCTTTTAATTACAGGACCAATTGGGAGTGGCAAGTCTTCAGCAGTCCATGCTTGCGCCAAAGAGCAAGGGTTTGTTATTTTAGAGTTCAACTCATCACATTCTACAAATGGGACTGCTATCAGGAACTTGGAACATTCTCTTAATTCACTTGGGTTCAAAAGCCAATCAGGAAGCACTGCAAGTTCACATAAGACCTCAGCTCTGGCTATGCTCAGTGGTAAAGCTGCTGATGAGGCGAATGGAGTGGATGAACTGGTAACCATATCCGATGATGAAGCCCGTAGCCATAGTGGATCAACATTAAAGATACACGGTGAAAATAATGATACTGAAAAATATAAAATCCATCGTCTAGTTCTAGTTGAGGATGTGGACATCCTTTTTGCCGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCTGAGACATCAAAGGGGCCAATTATATTGACCAGTAATAGTGATAATCCTGGTCTGCGACATAAGTTTGACATGCTCCATGTTCCATTCGTGTTGCCATCACCAAAGGAATTGCTTTGCCATTTGTACAGTGTTTGTCTCACTGAAGGAGTCAACATCCATCCTCTTTTACTAGAGAAGTTTATACATTCTTGTGATGGAGATATCCGAAAAATTATTATGCATCTTCAATTCTGGTTTCAGAGTAAAACATTTAAAAAAGATGAAAAGGCACAAACAGGTTATGGCTCACTTCCATTTGATCTTGAGCTTGCCCATGAGATTCTTCCGAAGATAATGTCCTGGGATTTCCCCTCTGTGATTTCCGATCTAATTGAGAACAAAATAGCTAAACAAACAAATATAATGGAAGAAAACTCAAAAGGGTTTACAGAAAAGCTTCACATAAGTGAACGGCAAAAAGATTTAAAAGTGAATTATACGGAGACTGATGATATAGAGGCCATGAAGGCGGAGATGATTAATAGAAATGGATTGTTGACGGATTACTGTGAGCTTGAAATTCAACGTAGCACTATTTCTGAGTTTTCCAATTCTTCTGGTTCCCCACTTGCATCCTCTAGGCATAATGGTCGAAGGAAACTTGTAGTGATGTCCTCTGACTCTGAGGATGACAATTCAAATTGTGAATATCCTGTAGACTCCCACGATGAAGCTAATACGAGGCAACTGATGAAAGAAAATAATGGTTGTCCATCAGAATTTCAATTAAATGGAAACTACCCGGACACATCAATTGACAGACTAGTTTGTTCCTATTTGGAGCACTCAGAGGACGAAGATTCTAAATATTCAGAAATGGCTGATGGTGCATACTTGAATGAAACTTGTAAATCACTAGATGTATCATGTGTGCCAGAATCAACGTTTGTTCCTGAAACTGAAATTGAAAACGGAACAGAGACATTGTCTGGAGCCGTGTCTTCTGGTCCTGCTCTCCCTTTTGTTAGTCTTCCAGAAGTATCTGTAAATAATGAGTTGAAACTATTCAATGTCAATGTTCGTAGGCGCTTAAAAAAATTGTCACAGAATCCAGATTTGTTGGCGGATACTGAAATTCCAGATCATTCTTTTCAAGGGGTTCTGCCTGATGTTCAAGATGAACATACGGAGACACTTGTTAAAGTGATGGATGAATGCAGTCGAATGGATTTCAAACCAAAGCCAACATTGTCGCAGTCCAATCCATTAGACGAGACAGAAAAGATACAAAACGTGTGGAGAGATCTCCGTGATCGCCGAGTGGATTTAAGACAGCATTCTATCTCAGAAGAGATTGGTGCTTTTCATGTTGTTAAACTTGCTAGTGGACTGTGCAATCTAATTTCAGATGCTGACTTGTTTCCTAAATGGGATAGAATGGAACCTTCAATGTTCCTTTCTTACGAAGCTGCATCACATGATTATTGTGAACAAATGATGTCCACTGTGGCTGAGCATGGGTTTTGCTTTTACGCTAAGCTTATAGCAGATGAAGGATCAAAGTTGGGTTGTGCAAATTGTGCTGATATTACTTCTGAGATGTTGGCTTCCTCCACTGATATTATGGCATTGGGGAAATTATCCCGACAGGATCTCTCGAAAATGAAGGCTTTCCGTACTGGAAATGAAGTAGTGTGGAACACCCAAATAAATATGCAAAAGAGTGAAAAGAAAAGATCTCTAATCGAGATCATCCAATCCGTTGCTCCTCCAAGAACATCCTTGGCATTAAAAGGTTATGCATTCAACGAATATCTATCTTCACTACGCCAAATTTGTAGGTCTGAAGCTTTCCGTATTTCACAAGTGGTCGAAAAGAAGAGAGGAGGAAGGGTACGGGGCGTTCACCATTACTTGAGCACAAATACCAAGTTGTCTCCAGACGAAATATCTTTGGTGACCGATGGTGATCCCTACAGAAAAATTTCTTCCCAACATACAACATAG 3642 0.4102 MESTVMDCSPSSSAAPPRRSGRRKLVQSTLFPLKPPEPVEKKDKEDEPDEDYSEAKNNKKRKRSKAKATPPIDEDYSEAENNKKRTRSKAKATPPKKGSSKRPTPKKKATANGRSTSQQVLANSDQVKAPVYDLFLEAKLAAEEDSRIYAGRQVHPFFSLWKEGKKVHDVSESGSNLPTTKSKHKRTTCGPIHVFENVKDDTSSVDWRNWMFMENITSMNYGQESVNSSVFEGSVESLNFDKLHSFLNPSGISISQNALSPSNPSSLAEQSSSLTCGNAELDMKVDESVTPTVQAGIFRKSKDTEPLNRFLQESMRSYYRSCLDIEESNLWTHKYKPTKAVEVCGNDESVNFLSDWLHCWHERQYKSRNDNTDTDKSGMQDVEDEDDDYKCSYSDCDSEDMNEKDSLQNVLLITGPIGSGKSSAVHACAKEQGFVILEFNSSHSTNGTAIRNLEHSLNSLGFKSQSGSTASSHKTSALAMLSGKAADEANGVDELVTISDDEARSHSGSTLKIHGENNDTEKYKIHRLVLVEDVDILFAEDRGCIAAIQQIAETSKGPIILTSNSDNPGLRHKFDMLHVPFVLPSPKELLCHLYSVCLTEGVNIHPLLLEKFIHSCDGDIRKIIMHLQFWFQSKTFKKDEKAQTGYGSLPFDLELAHEILPKIMSWDFPSVISDLIENKIAKQTNIMEENSKGFTEKLHISERQKDLKVNYTETDDIEAMKAEMINRNGLLTDYCELEIQRSTISEFSNSSGSPLASSRHNGRRKLVVMSSDSEDDNSNCEYPVDSHDEANTRQLMKENNGCPSEFQLNGNYPDTSIDRLVCSYLEHSEDEDSKYSEMADGAYLNETCKSLDVSCVPESTFVPETEIENGTETLSGAVSSGPALPFVSLPEVSVNNELKLFNVNVRRRLKKLSQNPDLLADTEIPDHSFQGVLPDVQDEHTETLVKVMDECSRMDFKPKPTLSQSNPLDETEKIQNVWRDLRDRRVDLRQHSISEEIGAFHVVKLASGLCNLISDADLFPKWDRMEPSMFLSYEAASHDYCEQMMSTVAEHGFCFYAKLIADEGSKLGCANCADITSEMLASSTDIMALGKLSRQDLSKMKAFRTGNEVVWNTQINMQKSEKKRSLIEIIQSVAPPRTSLALKGYAFNEYLSSLRQICRSEAFRISQVVEKKRGGRVRGVHHYLSTNTKLSPDEISLVTDGDPYRKISSQHTT 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium856g00007 1213 Gene3D - 584 646 - -
Vium856g00007 1213 Gene3D - 328 577 IPR027417 -
Vium856g00007 1213 MobiDBLite consensus disorder prediction 109 124 - -
Vium856g00007 1213 MobiDBLite consensus disorder prediction 36 58 - -
Vium856g00007 1213 MobiDBLite consensus disorder prediction 67 87 - -
Vium856g00007 1213 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 11 1210 IPR004582 GO:0006281
Vium856g00007 1213 MobiDBLite consensus disorder prediction 1 16 - -
Vium856g00007 1213 MobiDBLite consensus disorder prediction 1 124 - -
Vium856g00007 1213 MobiDBLite consensus disorder prediction 368 389 - -
Vium856g00007 1213 MobiDBLite consensus disorder prediction 88 108 - -
Vium856g00007 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 660 IPR027417 -
Vium856g00007 1213 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 586 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium856g00007 Vium-Chr856 67755 77742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium856g00007 325 629 Core DNA Replication Machinery Family AT5G22010 24.104 2.33e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium856g00007 K26118 - gmx:100784209 1550.8