Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium856g00006 ATGGAGTCCACCGTCATGGACTGCAGTCCTTCCTCCAGTGCCGCCCCGCCCCGCCGCAGTGGTCGCCGGAAGCTGGTTCAATCGACGCTCTTCCCTCTCAAGCCACCGGAGCCCGTTGAGAAGAAGGACAAAGAGGACGAACCCGACGAGGATTACTCTGAGGCTAAGAATAACAAGAAGAGGAAGAGGTCCAAGGCAAAAGCCACTCCTCCGATCGACGAGGATTACTCTGAGGCTGAGAATAACAAGAAGAGGACGAGGTCCAAGGCAAAAGCCACTCCTCCGAAAAAAGGTTCTTCTAAGCAGCGTCCCACGCCAAAGAAAAAAGCAACTGCTAATGGCAGGTCAACTTCGCAGCAGGTGTTGGCTAATTCCGATCAGGTTAAGGCACCTGTGTATGATTTGTTTCTAGAGGCAAAATTGGCTGCTGAGGAAGATTCGAGGATATATGCAGGACGTCAGGTACATCCATTTTTTTCATTATGGAAGGAGGGAAAAAAAGTTCATGATGTGAGTGAATCAGGAAGTAATTTACCAACAACTAAGAGTAAGCATAAAAGGACTACTTGCGGCCCTATTCACGTATTTGAAAATGTTAAGGATGATACGTCATCAGTTGACTGGAGAAACTGGATGTTTATGGAGAATATCACCTCCATGAACTATGGTCAAGAGAGTGTAAATTCATCTGTTTTCGAGGGTTCTGTTGAATCCTTAAATTTTGATAAGCTTCACAGTTTTTTGAATCCATCAGGCATTTCAATTTCTCAGAATGCCTTATCACCATCAAACCCATCTTCACTAGCAGAGCAATCATCATCTCTGACGTGTGGAAATGCTGAACTGGACATGAAGGTGGATGAATCTGTTACTCCAACTGTGCAAGCTGGCATTTTTAGAAAGTCTAAAGATACCGAACCACTGAATAGATTTCTTCAAGAAAGTATGAGATCATACTACCGTAGCTGTTTAGATATAGAGGAGTCCAACTTATGGACACACAAATATAAGCCAACGAAGGCTGTTGAGGTATGCGGGAATGATGAATCTGTTAATTTCTTGAGTGATTGGCTACATTGTTGGCATGAAAGGCAATATAAAAGCAGGAATGATAATACTGACACTGATAAAAGCGGCATGCAAGATGTTGAAGATGAAGATGATGATTATAAATGTTCTTATAGTGACTGTGACTCAGAAGATATGAATGAGAAGGATTCCCTGCAAAATGTTCTTTTAATTACAGGACCAATTGGGAGTGGCAAGTCTTCAGCAGTCCATGCTTGCGCCAAAGAGCAAGGGTTTGTTATTTTAGAGTTCAACTCATCACATTCTACAAATGGGACTGCTATCAGGAACTTGGAACATTCTCTTAATTCACTTGGGTTCAAAAGCCAATCAGGAAGCACTGCAAGTTCACATAAGACCTCAGCTCTGGCTATGCTCAGTGGTAAAGCTGCTGATGAGGCGAATGGAGTGGATGAACTGGTAACCATATCCGATGATGAAGCCCGTAGCCATAGTGGATCAACATTAAAGATACACGGTGAAAATAATGATACTGAAAAATATAAAATCCATCGTCTAGTTCTAGTTGAGGATGTGGACATCCTTTTTGCCGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCTGAGACATCAAAGGGGCCAATTATATTGACCAGTAATAGTGATAATCCTGGTCTGCGACATAAGTTTGACATGCTCCATGTTCCATTCGTGTTGCCATCACCAAAGGAATTGCTTTGCCATTTGTACAGTGTTTGTCTCACTGAAGGAGTCAACATCCATCCTCTTTTACTAGAGAAGTTTATACATTCTTGTGATGGAGATATCCGAAAAATTATTATGCATCTTCAATTCTGGTTTCAGAGTAAAACATTTAAAAAAGATGAAAAGGCACAAACAGGTTATGGCTCACTTCCATTTGATCTTGAGCTTGCCCATGAGATTCTTCCGAAGATAATGTCCTGGGATTTCCCCTCTGTGATTTCCGATCTAATTGAGAACAAAATAGCTAAACAAACAAATATAATGGAAGAAAACTCAAAAGGGTTTACAGAAAAGCTTCACATAAGTGAACGGCAAAAAGATTTAAAAGTGAATTATACGGAGACTGATGATATAGAGGCCATGAAGGCGGAGATGATTAATAGAAATGGATTGTTGACGGATTACTGTGAGCTTGAAATTCAACGTAGCACTATTTCTGAGTTTTCCAATTCTTCTGGTTCCCCACTTGCATCCTCTAGGCATAATGGTCGAAGGAAACTTGTAGTGATGTCCTCTGACTCTGAGGATGACAATTCAAATTGTGAATATCCTGTAGACTCCCACGATGAAGCTAATACGAGGCAACTGATGAAAGAAAATAATGGTTGTCCATCAGAATTTCAATTAAATGGAAACTACCCGGACACATCAATTGACAGACTAGTTTGTTCCTATTTGGAGCACTCAGAGGACGAAGATTCTAAATATTCAGAAATGGCTGATGGTGCATACTTGAATGAAACTTGTAAATCACTAGATGTATCATGTGTGCCAGAATCAACGTTTGTTCCTGAAACTGAAATTGAAAACGGAACAGAGACATTGTCTGGAGCCGTGTCTTCTGGTCCTGCTCTCCCTTTTGTTAGTCTTCCAGAAGTATCTGTAAATAATGAGTTGAAACTATTCAATGTCAATGTTCGTAGGCGCTTAAAAAAATTGTCACAGAATCCAGATTTGTTGGCGGATACTGAAATTCCAGATCATTCTTTTCAAGGGGTTCTGCCTGATGTTCAAGATGAACATACGGAGACACTTGTTAAAGTGATGGATGAATGCAGTCGAATGGATTTCAAACCAAAGCCAACATTGTCGCAGTCCAATCCATTAGACGAGACAGAAAAGATACAAAACGTGTGGAGAGATCTCCGTGATCGCCGAGTGGATTTAAGACAGCATTCTATCTCAGAAGAGATTGGTGCTTTTCATGTTGTTAAACTTGCTAGTGGACTGTGCAATCTAATTTCAGATGCTGACTTGTTTCCTAAATGGGATAGAATGGAACCTTCAATGTTCCTTTCTTACGAAGCTGCATCACATGATTATTGTGAACAAATGATGTCCACTGTGGCTGAGCATGGGTTTTGCTTTTACGCTAAGCTTATAGCAGATGAAGGATCAAAGTTGGGTTGTGCAAATTGTGCTGATATTACTTCTGAGATGTTGGCTTCCTCCACTGATATTATGGCATTGGGGAAATTATCCCGACAGGATCTCTCGAAAATGAAGGCTTTCCGTACTGGAAATGAAGTAGTGTGGAACACCCAAATAAATATGCAAAAGAGTGAAAAGAAAAGATCTCTAATCGAGATCATCCAATCCGTTGCTCCTCCAAGAACATCCTTGGCATTAAAAGGTTATGCATTCAACGAATATCTATCTTCACTACGCCAAATTTGTAGGTCTGAAGCTTTCCGTATTTCACAAGTGGTCGAAAAGAAGAGAGGAGGAAGGGTACGGGGCGTTCACCATTACTTGAGCACAAATACCAAGTTGTCTCCAGACGAAATATCTTTGGTGACCGATGGTGATCCCTACAGAAAAATTTCTTCCCAACATACAACATAG 3645 0.4104 MESTVMDCSPSSSAAPPRRSGRRKLVQSTLFPLKPPEPVEKKDKEDEPDEDYSEAKNNKKRKRSKAKATPPIDEDYSEAENNKKRTRSKAKATPPKKGSSKQRPTPKKKATANGRSTSQQVLANSDQVKAPVYDLFLEAKLAAEEDSRIYAGRQVHPFFSLWKEGKKVHDVSESGSNLPTTKSKHKRTTCGPIHVFENVKDDTSSVDWRNWMFMENITSMNYGQESVNSSVFEGSVESLNFDKLHSFLNPSGISISQNALSPSNPSSLAEQSSSLTCGNAELDMKVDESVTPTVQAGIFRKSKDTEPLNRFLQESMRSYYRSCLDIEESNLWTHKYKPTKAVEVCGNDESVNFLSDWLHCWHERQYKSRNDNTDTDKSGMQDVEDEDDDYKCSYSDCDSEDMNEKDSLQNVLLITGPIGSGKSSAVHACAKEQGFVILEFNSSHSTNGTAIRNLEHSLNSLGFKSQSGSTASSHKTSALAMLSGKAADEANGVDELVTISDDEARSHSGSTLKIHGENNDTEKYKIHRLVLVEDVDILFAEDRGCIAAIQQIAETSKGPIILTSNSDNPGLRHKFDMLHVPFVLPSPKELLCHLYSVCLTEGVNIHPLLLEKFIHSCDGDIRKIIMHLQFWFQSKTFKKDEKAQTGYGSLPFDLELAHEILPKIMSWDFPSVISDLIENKIAKQTNIMEENSKGFTEKLHISERQKDLKVNYTETDDIEAMKAEMINRNGLLTDYCELEIQRSTISEFSNSSGSPLASSRHNGRRKLVVMSSDSEDDNSNCEYPVDSHDEANTRQLMKENNGCPSEFQLNGNYPDTSIDRLVCSYLEHSEDEDSKYSEMADGAYLNETCKSLDVSCVPESTFVPETEIENGTETLSGAVSSGPALPFVSLPEVSVNNELKLFNVNVRRRLKKLSQNPDLLADTEIPDHSFQGVLPDVQDEHTETLVKVMDECSRMDFKPKPTLSQSNPLDETEKIQNVWRDLRDRRVDLRQHSISEEIGAFHVVKLASGLCNLISDADLFPKWDRMEPSMFLSYEAASHDYCEQMMSTVAEHGFCFYAKLIADEGSKLGCANCADITSEMLASSTDIMALGKLSRQDLSKMKAFRTGNEVVWNTQINMQKSEKKRSLIEIIQSVAPPRTSLALKGYAFNEYLSSLRQICRSEAFRISQVVEKKRGGRVRGVHHYLSTNTKLSPDEISLVTDGDPYRKISSQHTT 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium856g00006 1214 Gene3D - 329 578 IPR027417 -
Vium856g00006 1214 MobiDBLite consensus disorder prediction 105 125 - -
Vium856g00006 1214 MobiDBLite consensus disorder prediction 369 390 - -
Vium856g00006 1214 MobiDBLite consensus disorder prediction 36 58 - -
Vium856g00006 1214 MobiDBLite consensus disorder prediction 67 87 - -
Vium856g00006 1214 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 587 648 - -
Vium856g00006 1214 MobiDBLite consensus disorder prediction 1 16 - -
Vium856g00006 1214 Gene3D - 585 647 - -
Vium856g00006 1214 MobiDBLite consensus disorder prediction 1 125 - -
Vium856g00006 1214 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 11 1211 IPR004582 GO:0006281
Vium856g00006 1214 MobiDBLite consensus disorder prediction 88 104 - -
Vium856g00006 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 661 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium856g00006 Vium-Chr856 67755 77742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium856g00006 326 630 Core DNA Replication Machinery Family AT5G22010 24.104 2.35e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium856g00006 K26118 - gmx:100784209 1548.49