Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium856g00001 ATGGAGAACCAAAATGGTGGTGCTAAGATGAGCCAAGGGCTTCGCAAGCTGAAGCCTTACCTTGCTATATTGTCCCTTCAGTTTGGCTACTCAGGGATGTATATCATCACCATGGTTTCTTTCAAGCATGGCATGAGTCATTGGATACTCTCAGTCTACCGTCACGTAGTTGCCGCCATTATCATAGTCCCTTTTGCACTTGTCCTTGAAAGAAAAATAAGACCAAAGATGACTCTTCCCATCTTCCTCAGGATAGTCGCACTTGGTTTCCTTGAGCCAGTGCTGGATCAGAACTTGTACAACATGGGAATGAAAATGACTTCAACAACGTTTGCATCCGCCACAGTTAATGTCCTCCCGGCCATTACTTTTATTATGGCTCTCATTTTCAGGCTGGAGAAGGTGAACCTGAGAAAATTTCACAGCCTAGCGAAGGTCATTGGAACGGTTATAACAGTTTCAGGAGCTATGGTTATGACTCTGTACAAAGGTCCTGCCTTCCAAATCATAAAGGGTGGAGGAGCCATCAGCAGCCACGGGAACTCTAGCAGTAGTACCACTGAACCCTCTGATCAACACTGGGTGGTTGGCACAGTCATGCTCATATCAAGTTGTGCCAGTTGGGCTGGTTTCTTCATTTTGCAATCATTCACTTTGAAGAAGTACCCAGCAGAGCTCTCACTCACAGCATGGATTTGCGTAATGGGAATCATTGAGGGTTCAATCGCATCCCTTATATTTGAACGAGACTTTAGTGTCTGGGTCATAGGCTGGGATTCAAGGCTTCTTGCTTGCGTGTATTCTGGGGTGATTTGTTCTGGAATGGCGTACTACGTACAAGGGGTTGTGACCAGGGAACGTGGACCAGTGTTTGTGACATCTTTCAGCCCTCTATGTATGATAATCACCGCTGCATTGGGTTCTCTTGTTTTAGCCGAACAAGTTCATCTTGGAAGTATATTTGGGGCTATTCTGATCGTGTGCGGACTTTACACTGTGGTGTGGGGCAAAAGCAAAGACCGTGTGAACACAACAGAAACAGGGAAAGAAGCAAACCAAGGATTGCCAATGAAGGACAGTACAAAATCAGCGTCAGACAGCTTTTATGGGCTTGAGATCAATGTTTCAGATGAGGTGTTGAGGAAAGGTGTCCCACCAACAACCTTATCATGA 1173 0.4561 MENQNGGAKMSQGLRKLKPYLAILSLQFGYSGMYIITMVSFKHGMSHWILSVYRHVVAAIIIVPFALVLERKIRPKMTLPIFLRIVALGFLEPVLDQNLYNMGMKMTSTTFASATVNVLPAITFIMALIFRLEKVNLRKFHSLAKVIGTVITVSGAMVMTLYKGPAFQIIKGGGAISSHGNSSSSTTEPSDQHWVVGTVMLISSCASWAGFFILQSFTLKKYPAELSLTAWICVMGIIEGSIASLIFERDFSVWVIGWDSRLLACVYSGVICSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSLVLAEQVHLGSIFGAILIVCGLYTVVWGKSKDRVNTTETGKEANQGLPMKDSTKSASDSFYGLEINVSDEVLRKGVPPTTLS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium856g00001 390 PANTHER WAT1-RELATED PROTEIN 19 346 IPR030184 GO:0016020|GO:0022857
Vium856g00001 390 Pfam EamA-like transporter family 197 334 IPR000620 GO:0016020
Vium856g00001 390 Pfam EamA-like transporter family 28 152 IPR000620 GO:0016020
Vium856g00001 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 339 - -
Vium856g00001 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium856g00001 Vium-Chr856 25515 29054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium856g00001 7 374 Nodulin-like Gene Family AT4G08300 66.304 1.60e-175 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium856g00001 - - gmx:100783910 676.781