Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8566g00015 ATGGAAATTTTGTGTTGGGAAATATGGCGACATAAAGAGAAAAAGGAAGAAGCAACACAACCTGATCCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTGAAAGCTGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTACGGGATGTTCGCTTGATTATGGACCGGAATTCTAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGCCATGTCTGTCCCAATGGCAATAGCTCTTTCAGGCCAACCTGTCCTAGGTCAACCAGTGATGGTGAAGCCGTCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTGGTGGATCCACTGGACTTATAGGTCCGTATTCTGGAGGAGCAAGAAGGCTCTATGTTGGAAATCTGCATATCAGTATGAGTGAAGCTGATATTCGCAAGGTATTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTCGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTTGAAGATGCCAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTCGAACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCTAGAGGCTGGAGGAAATACTGGTGATTTTGATGATGATGATGAAGGAGGTGGCTTGTCATTGAATGCATGTTCTCGAGCAATACTAATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCTATTGTCAACAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTTGCAGCTGTGCCCGCGGGTTCTCCCCTTTCTTCTATTCCTGCAGTATCTGGGTTGTCAGGTGGAGGTCTCCAAATTCCCACGGCTACAATTCCTACTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAACATGTTTGATCCCAAGGACGAGACTGAACCTGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGACGTTAAAACATATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGATACCCAATCTGCAATAAGTGCTCAGCGGTCCTTGCACGGACGATGGTTTGCTGGGAAGATGATCACAGCGAGCTTCATGGTGCCTCAGTCATACGAAGATAAATTCCCGGACAGCAGATAA 1248 0.4399 MEILCWEIWRHKEKKEEATQPDPDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPVLGQPVMVKPSEAEKNLVQSTTSVAGGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMLEAGGNTGDFDDDDEGGGLSLNACSRAILMQKLDRSGTASSMVGSLGNSIVNNTGLNLPATGNILAAVPAGSPLSSIPAVSGLSGGGLQIPTATIPTIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEDTQSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFPDSR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8566g00015 415 Gene3D - 126 214 IPR012677 -
Vium8566g00015 415 Gene3D - 8 115 IPR012677 -
Vium8566g00015 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 211 IPR000504 GO:0003723
Vium8566g00015 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 404 IPR000504 GO:0003723
Vium8566g00015 415 SMART rrm1_1 135 207 IPR000504 GO:0003723
Vium8566g00015 415 SMART rrm1_1 322 400 IPR000504 GO:0003723
Vium8566g00015 415 SMART rrm1_1 31 103 IPR000504 GO:0003723
Vium8566g00015 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 205 IPR000504 GO:0003723
Vium8566g00015 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 99 IPR000504 GO:0003723
Vium8566g00015 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 397 IPR000504 GO:0003723
Vium8566g00015 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 107 IPR000504 GO:0003723
Vium8566g00015 415 CDD RRM3_RBM39_like 320 402 - -
Vium8566g00015 415 FunFam Splicing factor, CC1-like protein 316 415 - -
Vium8566g00015 415 SMART rrm2_1 135 207 IPR003954 GO:0003676
Vium8566g00015 415 SMART rrm2_1 322 400 IPR003954 GO:0003676
Vium8566g00015 415 SUPERFAMILY RNA-binding domain, RBD 132 229 IPR035979 GO:0003676
Vium8566g00015 415 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 227 339 IPR029123 -
Vium8566g00015 415 SUPERFAMILY RNA-binding domain, RBD 21 130 IPR035979 GO:0003676
Vium8566g00015 415 SUPERFAMILY RNA-binding domain, RBD 317 401 IPR035979 GO:0003676
Vium8566g00015 415 CDD RRM1_RBM39_like 31 103 - -
Vium8566g00015 415 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 10 414 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vium8566g00015 415 FunFam CC1-like, splicing factor 129 238 - -
Vium8566g00015 415 Gene3D - 316 415 IPR012677 -
Vium8566g00015 415 FunFam RNA-binding protein 39 isoform X1 23 115 - -
Vium8566g00015 415 NCBIfam splicing factor, CC1-like family 10 413 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8566g00015 Vium-Chr8566 32765 38607 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8566g00015 31 197 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 3.11e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8566g00015 K13091 - gmx:100789839 712.22