Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8566g00014 ATGCGACATAAAGAGAAAAAGGAAGAAGCAACACAACCTGATCCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTGAAAGCTGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTACGGGATGTTCGCTTGATTATGGACCGGAATTCTAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGCCATGTCTGTCCCAATGGCAATAGCTCTTTCAGGCCAACCTGTCCTAGGTCAACCAGTGATGGTGAAGCCGTCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTGGTGGATCCACTGGACTTATAGGTCCGTATTCTGGAGGAGCAAGAAGGCTCTATGTTGGAAATCTGCATATCAGTATGAGTGAAGCTGATATTCGCAAGGTATTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTCGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTTGAAGATGCCAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTCGAACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCTAGAGGCTGGAGGAAATACTGGTGATTTTGATGATGATGATGAAGGAGGTGGCTTGTCATTGAATGCATGTTCTCGAGCAATACTAATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCTATTGTCAACAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTTGCAGCTGTGCCCGCGGGTTCTCCCCTTTCTTCTATTCCTGCAGTATCTGGGTTGTCAGGTGGAGGTCTCCAAATTCCCACGGCTACAATTCCTACTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAACATGTTTGATCCCAAGGACGAGACTGAACCTGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGACGTTAAAACATATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGATACCCAATCTGCAATAAGTGCTCAGCGGTCCTTGCACGGACGATGGTTTGCTGGGAAGATGATCACAGCGAGCTTCATGGTGCCTCAGTCATACGAAGATAAATTCCCGGACAGCAGATAA 1224 0.442 MRHKEKKEEATQPDPDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPVLGQPVMVKPSEAEKNLVQSTTSVAGGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMLEAGGNTGDFDDDDEGGGLSLNACSRAILMQKLDRSGTASSMVGSLGNSIVNNTGLNLPATGNILAAVPAGSPLSSIPAVSGLSGGGLQIPTATIPTIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEDTQSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFPDSR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8566g00014 407 SUPERFAMILY RNA-binding domain, RBD 13 120 IPR035979 GO:0003676
Vium8566g00014 407 FunFam RNA-binding protein 39 isoform X1 15 107 - -
Vium8566g00014 407 SMART rrm2_1 314 392 IPR003954 GO:0003676
Vium8566g00014 407 SMART rrm2_1 127 199 IPR003954 GO:0003676
Vium8566g00014 407 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 406 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vium8566g00014 407 MobiDBLite consensus disorder prediction 1 20 - -
Vium8566g00014 407 SMART rrm1_1 314 392 IPR000504 GO:0003723
Vium8566g00014 407 SMART rrm1_1 23 95 IPR000504 GO:0003723
Vium8566g00014 407 SMART rrm1_1 127 199 IPR000504 GO:0003723
Vium8566g00014 407 FunFam Splicing factor, CC1-like protein 308 407 - -
Vium8566g00014 407 CDD RRM3_RBM39_like 312 394 - -
Vium8566g00014 407 FunFam CC1-like, splicing factor 121 230 - -
Vium8566g00014 407 Gene3D - 308 407 IPR012677 -
Vium8566g00014 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 203 IPR000504 GO:0003723
Vium8566g00014 407 CDD RRM1_RBM39_like 23 95 - -
Vium8566g00014 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 396 IPR000504 GO:0003723
Vium8566g00014 407 Gene3D - 118 206 IPR012677 -
Vium8566g00014 407 Gene3D - 1 107 IPR012677 -
Vium8566g00014 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 99 IPR000504 GO:0003723
Vium8566g00014 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 91 IPR000504 GO:0003723
Vium8566g00014 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 197 IPR000504 GO:0003723
Vium8566g00014 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 389 IPR000504 GO:0003723
Vium8566g00014 407 SUPERFAMILY RNA-binding domain, RBD 124 221 IPR035979 GO:0003676
Vium8566g00014 407 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 219 331 IPR029123 -
Vium8566g00014 407 NCBIfam splicing factor, CC1-like family 3 405 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vium8566g00014 407 SUPERFAMILY RNA-binding domain, RBD 309 393 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8566g00014 Vium-Chr8566 32765 38644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8566g00014 23 189 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 2.77e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8566g00014 K13091 - gmx:100789839 712.22