Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8566g00010 ATGGATTTTGACGAGTATGAATATTTAGAGAAAACAGTTGAAAATGCTGAAGTTAAGAAGGAGAAGCATAGGGCTAATGGTAGTGATAGAAGTGTGAAGTCTGAAGAGAGAGGGCATGGTCGGAGTATCAAGCATAAGAGTGGTGAGAAGGATGACGACGACGTTGAATTTCATTCCAGGCATTCAAAATCTGGAGATGATTCCCGCCATTATGAGAGGAAGAGAGAAAGAGGCTCCTCTCGGCACGGTTTGCAGTACAGAGATGGAGTGAAGGAGAAAGATCAGCACAGAAGCTCTGGGGGCAGTAAGGATAGGAAGAGGGATAGAGACAGAGATCATGAGAACAAGGATGGGAAGAGAGGTAGGGAAAGAGAGATAGATCGCGAGCGCGACCAAGAAAGGGATAGAAGGGACCGAGGAAGTGAGAGTGAACAAGAACACCGCAGCAGAAGTAGATCCGAAAGGCATCGGAGTGATCCGGAAGACAGAGACAGAGAAACAATTCTTGATAAAGACAGAGAAATAAGCCGGGATAAGGATTTCAGAGACAGAGAAAGGGTGAGGGAAACGAGGGAACGGGTTAGAGAAAGCAGGCGACATAAAGAGAAAAAGGAAGAAGCAACACAACCTGATCCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTGAAAGCTGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTACGGGATGTTCGCTTGATTATGGACCGGAATTCTAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGCCATGTCTGTCCCAATGGCAATAGCTCTTTCAGGCCAACCTGTCCTAGGTCAACCAGTGATGGTGAAGCCGTCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTGGTGGATCCACTGGACTTATAGGTCCGTATTCTGGAGGAGCAAGAAGGCTCTATGTTGGAAATCTGCATATCAGTATGAGTGAAGCTGATATTCGCAAGGTATTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTCGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTTGAAGATGCCAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTCGAACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCTAGAGGCTGGAGGAAATACTGGTGATTTTGATGATGATGATGAAGGAGGTGGCTTGTCATTGAATGCATGTTCTCGAGCAATACTAATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCTATTGTCAACAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTTGCAGCTGTGCCCGCGGGTTCTCCCCTTTCTTCTATTCCTGCAGTATCTGGGTTGTCAGGTGGAGGTCTCCAAATTCCCACGGCTACAATTCCTACTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAACATGTTTGATCCCAAGGACGAGACTGAACCTGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGACGTTAAAACATATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGATACCCAATCTGCAATAAGTGCTCAGCGGTCCTTGCACGGACGATGGTTTGCTGGGAAGATGATCACAGCGAGCTTCATGGTGCCTCAGTCATACGAAGATAAATTCCCGGACAGCAGATAA 1815 0.4496 MDFDEYEYLEKTVENAEVKKEKHRANGSDRSVKSEERGHGRSIKHKSGEKDDDDVEFHSRHSKSGDDSRHYERKRERGSSRHGLQYRDGVKEKDQHRSSGGSKDRKRDRDRDHENKDGKRGREREIDRERDQERDRRDRGSESEQEHRSRSRSERHRSDPEDRDRETILDKDREISRDKDFRDRERVRETRERVRESRRHKEKKEEATQPDPDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPVLGQPVMVKPSEAEKNLVQSTTSVAGGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMLEAGGNTGDFDDDDEGGGLSLNACSRAILMQKLDRSGTASSMVGSLGNSIVNNTGLNLPATGNILAAVPAGSPLSSIPAVSGLSGGGLQIPTATIPTIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEDTQSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFPDSR 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8566g00010 604 Gene3D - 505 604 IPR012677 -
Vium8566g00010 604 MobiDBLite consensus disorder prediction 17 218 - -
Vium8566g00010 604 SMART rrm1_1 220 292 IPR000504 GO:0003723
Vium8566g00010 604 SMART rrm1_1 324 396 IPR000504 GO:0003723
Vium8566g00010 604 SMART rrm1_1 511 589 IPR000504 GO:0003723
Vium8566g00010 604 FunFam Splicing factor, CC1-like protein 505 604 - -
Vium8566g00010 604 NCBIfam splicing factor, CC1-like family 102 602 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vium8566g00010 604 SMART rrm2_1 324 396 IPR003954 GO:0003676
Vium8566g00010 604 SMART rrm2_1 511 589 IPR003954 GO:0003676
Vium8566g00010 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Vium8566g00010 604 Coils Coil 187 207 - -
Vium8566g00010 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 288 IPR000504 GO:0003723
Vium8566g00010 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 534 586 IPR000504 GO:0003723
Vium8566g00010 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 394 IPR000504 GO:0003723
Vium8566g00010 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 510 593 IPR000504 GO:0003723
Vium8566g00010 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 400 IPR000504 GO:0003723
Vium8566g00010 604 CDD RRM1_RBM39_like 220 292 - -
Vium8566g00010 604 FunFam RNA-binding protein 39 isoform X1 212 304 - -
Vium8566g00010 604 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 416 528 IPR029123 -
Vium8566g00010 604 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 603 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vium8566g00010 604 SUPERFAMILY RNA-binding domain, RBD 506 590 IPR035979 GO:0003676
Vium8566g00010 604 SUPERFAMILY RNA-binding domain, RBD 210 319 IPR035979 GO:0003676
Vium8566g00010 604 CDD RRM3_RBM39_like 509 591 - -
Vium8566g00010 604 Coils Coil 6 26 - -
Vium8566g00010 604 Gene3D - 316 403 IPR012677 -
Vium8566g00010 604 Gene3D - 152 304 IPR012677 -
Vium8566g00010 604 FunFam CC1-like, splicing factor 318 427 - -
Vium8566g00010 604 SUPERFAMILY RNA-binding domain, RBD 321 418 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8566g00010 Vium-Chr8566 32765 42295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8566g00010 220 386 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 3.23e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8566g00010 K13091 - gmx:100789839 846.269