Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8566g00002 ATGAACATCATCATGCAAAACTTGGTGGAAAGACTAAGATCCCTTGTGGGTTTGAACGGATGGGATTACTGTATCTACTGGAAATTGAGTGAAGACGAAAGGTTTCTGGAGTGGTTGGGTTGCTGTTGTGGTGGCACCGAAAGCAACAAAAATGGTGGTGAAGAACATCTTTTCCCTGTGTCTTCTGTGGTTTCATGCAGGGATACCACTTATCCACACCCCAGAACAAAGCCCTGTGATCTTCTTTCCCAACTTTCCACTTCCATACCCATAGATAATTCTGGGATTTATACACAGACCCTATTAACAAACCAACCCAGTTGGGTGAACTATTCCAATAGCTTGGATTCAAGCATTTTGGATGAAACAATGGGGACCCAGGTTTTGATTTCAGCGCCAGGTGGACTAATTGAGCTGTTTGTAACCAAACAAGTGGCCGAAGATCATCAAGTAATAGATTTTGTCAAAAGCCAGTGCATTGAAGCTGTGAACCACTCAATGAGCTTCAACATTGACGTGAATTCAATGAGCAACATGCAACAAAACCCACTTTTAGGCGATGAAAACGAAGGGAACAACAGCAGGAACACTCATTTCCACCCTTCGGATGTGATGACCATGGACCACCGCATCGGGCTGTGCAGTTCTCCACTGAACTTCATGCAGCAGTTCAACTACAATCAGCTGAACAGAATGAAGAGCGATGCCTTTTCTGAAGAATACCAAGGTTCCTTCTTTCATGACAAGCAAACAAACCCCGAAGACGAGCATGACAACACGTATCAGAAAAGCCTCATGACGACAGATTCACAGTACATGGAGTCTCTGGAAGCAAAAGAGAAGCAAGAGGAGGACAAGGAGTTGCTGAAACATGTTGTTGCTCGATCGGATTCAATGTCAGATTGCAGTGAGCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAAGGGAATCAATCCAAGAACCTGATGGCCGAGAGGAAGAGAAGGAAGAAGCTGAATGACAGGTTATACAAGCTTCGTTCTTTGGTTCCACGGATCTCAAAGTTGGACAGGGCCTCAATCCTCGGAGATGCTATTGAATACGTAAAGGATTTGCAGAAGCAAGTGAAGGAGCTGCAAGATGAGCTTGAGGAGAATGCAGACACCGAAAGCAACTGCATCAATGGAAATAATGACAACAATAATAATCAATATGTGGGTGTAGGTGAACTATGTCCAAACTCTGAACCTATTAAGGGCCAATCTGGGTTGCATGTGGGTACCTCAGGGAATGGCTATGTATACAAACAAAAGGAGGATGCAGCATTGATTGAGAAGCAAACCCAGCAAATGGAGCCGCAGGTGGAAGTGGCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTATTCTGTGAACACAGGCCTGGTGGGTTTGTGAAATTGATGGAGTCGTTGAACACTATTGGCATGGACGTGGTGCATGCCACGGTAACCAGCCACAAGGGTCTGGTGTCAAATGTTTTTGAAGTCGAGAAAAAAGACAATGAAACTGTCGAAGCCGAAGATGTAAGAGAGTCGCTGCTGGAGCTGACGCGGAACCGTTACAGAGGATGGAGTCATGAGGTGACACCTACGTCGGAAAATGCTGTCGGAAGGGATCAACACCAGATACCATCCTTTTCCCACCATTTTCATACTTAG 1695 0.4507 MNIIMQNLVERLRSLVGLNGWDYCIYWKLSEDERFLEWLGCCCGGTESNKNGGEEHLFPVSSVVSCRDTTYPHPRTKPCDLLSQLSTSIPIDNSGIYTQTLLTNQPSWVNYSNSLDSSILDETMGTQVLISAPGGLIELFVTKQVAEDHQVIDFVKSQCIEAVNHSMSFNIDVNSMSNMQQNPLLGDENEGNNSRNTHFHPSDVMTMDHRIGLCSSPLNFMQQFNYNQLNRMKSDAFSEEYQGSFFHDKQTNPEDEHDNTYQKSLMTTDSQYMESLEAKEKQEEDKELLKHVVARSDSMSDCSEQNEEEEDGKYRRRNGKGNQSKNLMAERKRRKKLNDRLYKLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCINGNNDNNNNQYVGVGELCPNSEPIKGQSGLHVGTSGNGYVYKQKEDAALIEKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVKLMESLNTIGMDVVHATVTSHKGLVSNVFEVEKKDNETVEAEDVRESLLELTRNRYRGWSHEVTPTSENAVGRDQHQIPSFSHHFHT 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8566g00002 564 SMART finulus 327 376 IPR011598 GO:0046983
Vium8566g00002 564 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 213 530 - -
Vium8566g00002 564 CDD ACT_UUR-ACR-like 465 528 - -
Vium8566g00002 564 CDD bHLH_AtAMS_like 324 389 - -
Vium8566g00002 564 MobiDBLite consensus disorder prediction 544 564 - -
Vium8566g00002 564 MobiDBLite consensus disorder prediction 293 332 - -
Vium8566g00002 564 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 383 IPR036638 GO:0046983
Vium8566g00002 564 Pfam Helix-loop-helix DNA-binding domain 326 371 IPR011598 GO:0046983
Vium8566g00002 564 Coils Coil 360 390 - -
Vium8566g00002 564 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 370 IPR011598 GO:0046983
Vium8566g00002 564 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 157 IPR025610 -
Vium8566g00002 564 ProSiteProfiles ACT domain profile. 464 536 IPR002912 -
Vium8566g00002 564 Gene3D - 309 386 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8566g00002 Vium-Chr8566 34 3182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8566g00002 5 543 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 45.242 5.16e-139 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium8566g00002 bHLH-MYC_N 4.9e-19 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8566g00002 - - gmx:100798282 887.486