Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8562g00001 ATGGAAGAAGCAAAAAAAAATTACACAAACTATGCCATTAGATGTGTATATGTTGTGCGCATAAGAACATCTAAAAAAGATAACAACAACAATGTCAACTACTTGAGATTAGTTTGCTCAAGGGAAGGGAAATATGTCTCTTCAATCAAGCCTGAGGTGAAAACACTTCCTAGCCAAACCAACCAATGTCCAACTGGCATAACCATTGCAAGGAAGGATGATAAATGGTTTATAAGGACCGTTGTCCTAGACCACAGTCATGATCTATGCCCAAAAACCTCCAAGCTAATTCCTGGCAATAGGAAATTGAGCATGCAAGCTAAACGCACATTGGAGGTCAATGATGATGCTGGAGTCCGGATTAATAAGAGTTTCCTTAGCATTATGAGCGATGCAGGTGGATTTGAAAATATGGACTTCATAGAGCGAGATGCGCGAAACTACATTGGCCAATACATAAGATCTTTATGTAAGGATGGTGATGGACAAGCCCTCCTACGACACTTTCCATCAATGAAAGATTTCAATAACGATTTCTTTTATGAAATTGTATTGTATGAAGGCAATACAATTTGTAGTGTCTTTTGGGCAGATGCAAGAACTCGAGACGCCTGTGAAGAATTTGGTGATGTGGTGTCTTTCAACACCACTTACTTAACAAATAAGTATGACATGCCATTTGCGCCTTTCGTCAGAGTTAACCATCATGGTCACTCCATTTTACTTGGTTGTTGA 735 0.3918 MEEAKKNYTNYAIRCVYVVRIRTSKKDNNNNVNYLRLVCSREGKYVSSIKPEVKTLPSQTNQCPTGITIARKDDKWFIRTVVLDHSHDLCPKTSKLIPGNRKLSMQAKRTLEVNDDAGVRINKSFLSIMSDAGGFENMDFIERDARNYIGQYIRSLCKDGDGQALLRHFPSMKDFNNDFFYEIVLYEGNTICSVFWADARTRDACEEFGDVVSFNTTYLTNKYDMPFAPFVRVNHHGHSILLGC 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8562g00001 244 PANTHER OS01G0519700 PROTEIN 2 218 - -
Vium8562g00001 244 Pfam FAR1 DNA-binding domain 8 90 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8562g00001 Vium-Chr8562 755 1489 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium8562g00001 FAR1 2.3e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8562g00001 - - vum:124847185 490.73