Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8561g00001 ATGGCTGAGGGTTTTGAGGCTTACCATGTGCCACAGCAAAGCAGAAGAGATAAGCTAAGAGTCGTGGTGACACAGAACCAACATGGTCTCGTTGAACCCTCCACTTTGCTTCCTTTGTACGACCCTTCTTCGTTCATATCTTCTGATTTGCTAACGAGCTTCCACAACAGCCACAAACACAACTTGGGTTGTGGCGTGAAGGAAGAACGTGCAAATTTGATGATGGGTTTTGCAGGCAGAGGAGGTGAAGGTGGAGGAGTCATGAACAATGGCTCTTCTTCTTCTTTGTGTTGTTCTTCTAACTCCTCTTCGGTTTCTTATTTGGATCCTGAATCCTCGTTGCCTCTGAACCAAGCTACAATTCAGGTCATTAACAACAACAACATGTTTCTTTACCAAGCACAGAACCTGGGAGAGTTTGACCAGGGTTATAATAATAATAATGGTAGTGAGATCATGGTGTTTAAGCCTGAGCCTTTGTCTTTGTCTCTCTCATCACATAGCAACGGTGTGAATCTTCAGCGATATGGATCTGTGGTTTGTGGTGATAAGGTTTGTGGGGTTGGTGGCGGTGGTGGATGTGTGGTTTATGGTGGTTCTGGATTGAATGAAGCTTCTAGGTGCACGGTGCCTATGGGGCCATTTACTGGTTATGCTTCTATATTGAAGGGATCGAGGTTCCTGAAACCTGCACAGCAATTATTGGAAGAGTTATGTGATGTTGGTGGAGTCTGTGCTGAAAAGATGGTGGCTGATGCATCATTGATGGAACCTGTTCCTCTTCCTCCTCCTGAAAATTCAAGTGAAGATCTACTTGGGGATCACGGGGGTGACCATGGTCGGAAAAAGTCAAGACTGTTAACTATGCTTGACGAGGTTTACAGGAGGTACAGGCAATACTATCAGCAGATGCACGCAGTAGTAACATCATTTGAGTATGTTTCAGGCCTTCGCAATGCAGCTCCTTATGCAAGTTTGGCAATAAAAGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCAATTACTGACCAACTTCAGTTTGCCAATAAAGCTCATTTTCACATCAGCAACAGGAAGGATGAATCTTCAAGGTTTGGCAACAGTGATAGAGGCCCTTACAGCCAAAGGCCAGGGTTTCTTGAGCACCAACCTGTTTGGCGGCCTCAAAGAGGACTCCCCGAGCGTGCTGTGTCTGTTCTCAGAGCATGGTTGTTTGAGCACTTTTTGCATCCTTATCCTACTGATACAGACAAGCTAATGTTGGCTAAACAAACTGGTCTTTCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTAGAAACACGGCAGGCTCAAAATTTAAAGAATTCACAGAAGGAAGAACATTGCAGGAACAAGTCAAGTGACAATTACGATAACTCCATTGTTTCTGAGAATCCATCTGGCTCAACAGAAAAGTTTCAGGGTCCTCCTTACAAGCGAGCTACAGACGAACTTACCAACATACCAGTTCGGACTCAGGAACAACTGAATCTTCCCTGCACAAGCAATCAGCCAGGGGGTGTTGAAGTGAGCATGGGTGGCAGTGCAAGCAATAGTGTGTCACTCACACTAGGACTTCATCAAAATCATGGCATTGGTTTGGCTGAACCTTTTAGCCTGAATGCAGCACAGCGATTTGGTGTTGCTCTTGAAACCAACAATGAAGGCTATGTGATGAGTGGATATGAGTCACAGAATAGGCATTTTGGAAGAGATGTCATTGGAGGACAACTGGTGCATGATTTTGTTGGCTGA 1824 0.4468 MAEGFEAYHVPQQSRRDKLRVVVTQNQHGLVEPSTLLPLYDPSSFISSDLLTSFHNSHKHNLGCGVKEERANLMMGFAGRGGEGGGVMNNGSSSSLCCSSNSSSVSYLDPESSLPLNQATIQVINNNNMFLYQAQNLGEFDQGYNNNNGSEIMVFKPEPLSLSLSSHSNGVNLQRYGSVVCGDKVCGVGGGGGCVVYGGSGLNEASRCTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCAEKMVADASLMEPVPLPPPENSSEDLLGDHGGDHGRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLRNAAPYASLAIKAMSKHFRCLKNAITDQLQFANKAHFHISNRKDESSRFGNSDRGPYSQRPGFLEHQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQNLKNSQKEEHCRNKSSDXNYDNSIVSENPSGSTEKFQGPPYKRATDELTNIPVRTQEQLNLPCTSNQPGGVEVSMGGSASNSVSLTLGLHQNHGIGLAEPFSLNAAQRFGVALETNNEGYVMSGYESQNRHFGRDVIGGQLVHDFVG 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8561g00001 608 SUPERFAMILY Homeodomain-like 389 454 IPR009057 -
Vium8561g00001 608 MobiDBLite consensus disorder prediction 478 496 - -
Vium8561g00001 608 MobiDBLite consensus disorder prediction 359 380 - -
Vium8561g00001 608 MobiDBLite consensus disorder prediction 463 477 - -
Vium8561g00001 608 CDD homeodomain 387 448 IPR001356 GO:0003677
Vium8561g00001 608 Gene3D - 390 452 - -
Vium8561g00001 608 MobiDBLite consensus disorder prediction 256 279 - -
Vium8561g00001 608 FunFam BEL1-like homeodomain protein 9 390 452 - -
Vium8561g00001 608 SMART prehox3 216 344 IPR006563 -
Vium8561g00001 608 Pfam Homeobox KN domain 404 443 IPR008422 GO:0003677|GO:0006355
Vium8561g00001 608 ProSiteProfiles 'Homeobox' domain profile. 384 447 IPR001356 GO:0003677
Vium8561g00001 608 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 468 - -
Vium8561g00001 608 MobiDBLite consensus disorder prediction 461 506 - -
Vium8561g00001 608 SMART HOX_1 387 451 IPR001356 GO:0003677
Vium8561g00001 608 Pfam Associated with HOX 221 343 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8561g00001 Vium-Chr8561 18207 23980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8561g00001 151 608 Homeobox Transcription Factor Family AT5G02030 51.029 5.06e-121 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium8561g00001 POX 1.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8561g00001 - - gmx:100805512 992.26