Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8555g00003 ATGGCAGCACGACTCCATTCCACTCGGGTCCTTGGAACCTTTGGATATCATGCACCAGAATATGCAATGACTGGTCAATTGAATGCAAAAAGTGATGTATACAGTTTTGGTGTCGTCCTCCTGGAACTCTTGACGGGAAGGAAGCCTGTTGATCATACATTACCACGGGGGCAACAGAGCTTGGTTACTTGGGCTACTCCAAGACTCAGTGAGGATAAAGTTAGACAGTGTGTAGATGCAAGACTAGGAGGAGATTACCCTCCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCCCCTTGTGGTGCAATATGA 315 0.4762 MAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDARLGGDYPPKAVAKMAAVAAPCGAI 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8555g00003 104 ProSiteProfiles Protein kinase domain profile. 1 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8555g00003 104 Pfam Protein kinase domain 8 53 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8555g00003 104 Gene3D Transferase(Phosphotransferase) domain 1 2 103 - -
Vium8555g00003 104 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 101 - -
Vium8555g00003 104 SUPERFAMILY Protein kinase-like (PK-like) 6 101 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8555g00003 Vium-Chr8555 27280 28960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8555g00003 7 103 Receptor kinase-like Gene Family AT4G02010 61.224 1.09e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vium8555g00003 Pkinase 3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8555g00003 K13436 - vum:124847178 201.06