Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8552g00001 ATGATGGAGTCGATGGAGTCATGTGTCCCACCTGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTACTATCTGAGGAAGAAGGTGGCTTCTCAAAAGATTGACCTTGACGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGATAGATGCAGGATCGGATATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCGGGGTTTTGGAAGGCTACAGGAAGAGACAAAGCAGTGTATGACAAGGCAAAACTAATTGGGATGAGAAAAACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAGTCTGATTGGATCATGCACGAGTATAGACTCGAATCCGACGAGAATGGACCTCCTCAGGAGGAAGGATGGGTTGTGTGCAGAGCCTTCAAGAAAAAAACCACTGGACAGACAAAGACTATTGAAGGATGGGACTCAAGCTACTTCTTCGAGGAAGGAAGTGGTGTAAGCACTGTGGTTGATCCAATCGATCTCATTTCAAGGCAGTCTCAGAGCTTTTTATCTCAAAATTTCTTGTGTAAGCAAGAGATAGAAGCGGATAACTTGAGTTGCATGCTTCAAGATCCATTTGTACAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCATTAGTGAAGAGGCCAAGCACAGTGTCACTGGTATCAGACAATAACGAAGACGAAGACATTCAAAACAGGTTATCCAACAACAACACAAAGAAAGTCACTGATTGGAGAGCTCTTGACAAGTTTGTAGCCTCTCAACTGAGTCAAGAAGACACGCTTGAAACCAATGGTCTCTCAAGCTTTGAACCCCATGATAGCCACGACATGGCACTGCTGTTACTGCAGAGCAGTAGGGATGAAGGGAACAGGCTAAGCCCTTTTCTAAACACAAGCTCAGACTGTGATATTGGGATATGCGTATTTGAAAAATGA 1011 0.4392 MMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQDRCRIGYEEQNEWYFFSHXDKKYPTGTRTNRATMAGFWKATGRDKAVYDKAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTIEGWDSSYFFEEGSGVSTVVDPIDLISRQSQSFLSQNFLCKQEIEADNLSCMLQDPFVQLPQLESPSLPLVKRPSTVSLVSDNNEDEDIQNRLSNNNTKKVTDWRALDKFVASQLSQEDTLETNGLSSFEPHDSHDMALLLLQSSRDEGNRLSPFLNTSSDCDIGICVFEK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8552g00001 337 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Vium8552g00001 337 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Vium8552g00001 337 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Vium8552g00001 337 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 256 - -
Vium8552g00001 337 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Vium8552g00001 337 FunFam NAC domain-containing protein 18 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8552g00001 Vium-Chr8552 6356 9102 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8552g00001 2 336 NAC Transcription Factor Family AT2G18060 64.674 5.20e-164 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium8552g00001 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8552g00001 - - pvu:PHAVU_002G110900g 675.626