Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8549g00002 ATGAAGAGTGTCGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAATGGGATGGGGATCTTTTCACTGATACGCAACTAAATTCACTGCCATCAGATTGTAGGAGTCATCAGCTGTTTCCTGGTGATCCTGAAATTCGTGCAGCTGGTGATGATTCTAACAGTTTGTCTTCTTCATATGATAATGTTAACCTTGCGGAAGGAAGGAGAGAATTGGAGAAGAGGAGGAGAGGTGTTGCTGATGAAGGTGGGGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGTCCAAGTATACCCTATCGTAGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAACTGGGAGTACCTTGAACCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAATGCGAAGGATTATCACCGCCGCCACAAAGTTTGTGATATGCATTCTAAGGCAAGCAAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCACGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTCTGGCAGGCCACAATAAGAGGAGGAGGAAAACGCATCCTGATGCTAGTGTAGTTAATGACGGCTCTGTGAATGAAGAAAAGGGCAGTAGTTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTCAAATGGTTCAGATAATATGACAAGCCAGGATGTTCTATCCCATCTGCTGAGGAACCTGGCAAGTCTGGCTGGTACAATTAATGGAAGAAATATAGTTTCTTTATTGGAGGGATCTCAAGATTTGGTAAAAGCAGGAACATCTGGAACTGCACAGAATGTTCCTAAGACAAATTCTAATGGTCCTGAAAAGTCCAGACCTGTTGATACTTCTAACAAGATGGATAATGGTGTAATCAGTCAGGACCCTCCAGAGTCTATGATACAATGTGAGATGACTCCTGCTAATGGTATGCCTAAAGGATTCATAGGTTCAGGCAGTGATGGAGTAGGAAGTTCAAAATCTCCTTCATTACCACAGTTGTCAAATGTACTTCTGTCACGGGATAGTCTTCCACCCTATTCAGTCTCAGCAGAGACTACGGTTGGAAGAATTGGGTTAAGTAATATTGACCTGAATAGTGCATATGATGATGTACAGGATTATGTCGAGAACACAAGAAATTCTCGTCCTCCTTTGCCTTCAGGTAATGGGTCCCTTGATAATCCTTTATGGGTCCAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACACAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATAGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTTCCCCATGCTCTCCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCTCCGAGATAGAGAGCTATATAAGGCCTGGCTGTATCATATTAACTGTATATCTCCGTCTAGAAAATTCCGCTTGGGAAGAGCTATGCCATAATCTAGGATCCAGCTTGAGAAAACTTGCTGTGCCGAATGATTCTTTTTGGAGATCAGGATGGATATATACAAGAGTGCAGCACTCGGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGTACCATTGCGATTCAAAAGTCCACAGAATTGTCAGATTTTTTGTGTTAAACCACTTGCTGTTTCTTCAAGTTCTTGTGTTCAATTTATTGTGAAAGGATTCAACCTTTTGTTTTCTAACACCAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTGCAAGATAGTTGTTATGATTCGGTTGATGCTGATGCTGCCATTGGACATAATGAGCTTCAGCATCTGAGTTTCTCTTGTAGTATACCGAATTTGACTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATATGTAAGCTGGAGAATGTCATTGAGGCAGCCGAGACTGCTGATGACATCCAAATGAAAACTAAACTAATGGAAGAAAAGACCCAAGCATTGTATTTCGTACAAGAAATGGGTTGGCTCCTTCACAGAAACCGTGCGAAAGTTAGGCTGGGTCCTGTGGCACCTCTACAAGATTGCTTCCATTTTAATCGGTTCATGTGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTATCTTTGAAGGCACTGTGGATATAGGAGAGCATACATCAGTTGAGTTATCATTGTTAAAGATGGATCTTCTGCACAAAGCTGTAAAAAGAAATTGCAGGCCTATGGTGGAACTACTGCTAAAATTTGTGCCAGCTAATACTTCAGATGGTGGAGACAGTAAAGAGAAGCAAGTCAACAAGTCCCCTAATAGATTCATATTCAGACCTGATTCTGTTGGGCCTTCTGGATTGACTCCCCTTCATGTTGCAGCAAGTATGCATGGTTCGGATAATGTATTGGATGCATTAACTGATGATCCAGGACTGGTGGGAATTGAGGCATGGAAAAGTGCTCAGGACACTACAGGTTTGACCCCTTATGATCATGCATCCCTGCGGGGCTACTACTCCTACATTCAACTTGTCCAGACGAAAATAAGCAACACATGCAAAAGTGAACATGTGCTTAATATCCCTGGCACTCTTGTAGATAGTAACATAAGGCAGAAGCAATCAGATGGCCATAGGTCATCAAAAGTTTCAAGTTTGCAAACTGAGAAGATTGAAACAACAGCAATGGTGCGACATTGTGGGGTATGCCAGCACAAGTTGGCGTACGGTGGTATGAGAAGTGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTTGCCATTGCAGCTGTGTGTGTCTGCGTGGCTTTGCTCTTCAAAAGCTCACCCAAAGTCTATTTCGTATTCCAGCCATTCAGTTGGGAGTCATTGGAATATGGATCCATGTAA 3039 0.4274 MKSVGKRSLEWDLNDWKWDGDLFTDTQLNSLPSDCRSHQLFPGDPEIRAAGDDSNSLSSSYDNVNLAEGRRELEKRRRGVADEGGVEMNDGAGSLNLNLGVQVYPIVEGEEKSGKKTKITGSTLNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDASVVNDGSVNEEKGSSYLLMSLLRILSNMHSNGSDNMTSQDVLSHLLRNLASLAGTINGRNIVSLLEGSQDLVKAGTSGTAQNVPKTNSNGPEKSRPVDTSNKMDNGVISQDPPESMIQCEMTPANGMPKGFIGSGSDGVGSSKSPSLPQLSNVLLSRDSLPPYSVSAETTVGRIGLSNIDLNSAYDDVQDYVENTRNSRPPLPSGNGSLDNPLWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPSEIESYIRPGCIILTVYLRLENSAWEELCHNLGSSLRKLAVPNDSFWRSGWIYTRVQHSVAFLYNGQVVLDVPLRFKSPQNCQIFCVKPLAVSSSSCVQFIVKGFNLLFSNTRLLCALEGKYLVQDSCYDSVDADAAIGHNELQHLSFSCSIPNLTGRGFIEVEDNGLSSCSFPFIVAEQEICSEICKLENVIEAAETADDIQMKTKLMEEKTQALYFVQEMGWLLHRNRAKVRLGPVAPLQDCFHFNRFMWLVGFSMDHDWCAVMKKLLNIIFEGTVDIGEHTSVELSLLKMDLLHKAVKRNCRPMVELLLKFVPANTSDGGDSKEKQVNKSPNRFIFRPDSVGPSGLTPLHVAASMHGSDNVLDALTDDPGLVGIEAWKSAQDTTGLTPYDHASLRGYYSYIQLVQTKISNTCKSEHVLNIPGTLVDSNIRQKQSDGHRSSKVSSLQTEKIETTAMVRHCGVCQHKLAYGGMRSALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYFVFQPFSWESLEYGSM 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8549g00002 1012 ProSiteProfiles Zinc finger SBP-type profile. 126 203 IPR004333 GO:0003677
Vium8549g00002 1012 FunFam Squamosa promoter-binding-like protein 14 120 190 - -
Vium8549g00002 1012 MobiDBLite consensus disorder prediction 282 323 - -
Vium8549g00002 1012 MobiDBLite consensus disorder prediction 282 353 - -
Vium8549g00002 1012 SUPERFAMILY SBT domain 127 207 IPR036893 GO:0003677|GO:0005634
Vium8549g00002 1012 MobiDBLite consensus disorder prediction 193 215 - -
Vium8549g00002 1012 Gene3D - 121 190 IPR036893 GO:0003677|GO:0005634
Vium8549g00002 1012 Pfam SBP domain 129 202 IPR004333 GO:0003677
Vium8549g00002 1012 SUPERFAMILY Ankyrin repeat 781 897 IPR036770 -
Vium8549g00002 1012 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 74 894 IPR044817 GO:0003677
Vium8549g00002 1012 MobiDBLite consensus disorder prediction 420 455 - -
Vium8549g00002 1012 Gene3D - 765 929 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8549g00002 Vium-Chr8549 7720 18336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8549g00002 5 1011 SBP-box Gene Family AT3G60030 45.233 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium8549g00002 SBP 5.6e-29 No_clan